Atomistry » Sodium » PDB 4q3a-4qm6
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Sodium in PDB, part 121 (files: 4801-4840), PDB 4q3a-4qm6

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 4801-4840 (PDB 4q3a-4qm6).
  1. 4q3a (Na: 4) - Pyld Cocrystallized with L-Lysine-Ne-3S-Methyl-L-Ornithine and Nad+
    Other atoms: Mg (4);
  2. 4q3b (Na: 4) - Pyld Cocrystallized with L-Lysine-Ne-D-Lysine and Nad+
    Other atoms: Mg (4);
  3. 4q3c (Na: 4) - Pyld Cocrystallized with L-Lysine-Ne-L-Lysine and Nad+
    Other atoms: Mg (4);
  4. 4q3d (Na: 4) - Pyld Cocrystallized with L-Ornithine-Nd-D-Ornithine and Nad+
    Other atoms: Mg (4);
  5. 4q3e (Na: 2) - Pyld Cocrystallized with L-Ornithine-Nd-D-Lysine and Nad+
    Other atoms: Mg (2);
  6. 4q3m (Na: 1) - Crystal Structure of Mgs-M4, An Aldo-Keto Reductase Enzyme From A Medee Basin Deep-Sea Metagenome Library
  7. 4q3n (Na: 1) - Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library
    Other atoms: Cl (2);
  8. 4q4b (Na: 2) - Crystal Structure of Limp-2 (Space Group C2221)
  9. 4q4e (Na: 1) - Crystal Structure of E.Coli Aminopeptidase N in Complex with Actinonin
    Other atoms: Zn (1);
  10. 4q4i (Na: 3) - Crystal Structure of E.Coli Aminopeptidase N in Complex with Amastatin
    Other atoms: Zn (1);
  11. 4q4l (Na: 1) - Crystal Structure of An Atp Synthase Subunit Beta 1 (F1-B1) From Burkholderia Thailandensis
  12. 4q4x (Na: 1) - Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL)
    Other atoms: Cl (5); Ca (5);
  13. 4q53 (Na: 1) - Crystal Structure of A Hypothetical Protein (BACUNI_04292) From Bacteroides Uniformis Atcc 8492 at 1.27 A Resolution
    Other atoms: I (11); Cl (9);
  14. 4q56 (Na: 1) - Structure of Helix Aspersa Agglutinin with Natural Glycosylation and N-Acetyl-Alpha-D-Galactosamine (Galnac)
    Other atoms: Zn (1);
  15. 4q5k (Na: 1) - Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.30 A Resolution
  16. 4q68 (Na: 3) - Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution
  17. 4q69 (Na: 2) - Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution
    Other atoms: Cl (1);
  18. 4q7w (Na: 1) - Crystal Structure of 1-Hydroxy-6-Methylpyridine-2(1H)-Thione Bound to Human Carbonic Anhydrase II
    Other atoms: Hg (1); Zn (1);
  19. 4q92 (Na: 6) - 1.90 Angstrom Resolution Crystal Structure of Apo Betaine Aldehyde Dehydrogenase (Betb) G234S Mutant From Staphylococcus Aureus (IDP00699) with Bme-Modified CYS289
  20. 4q98 (Na: 1) - Crystal Structure of A Fimbrilin (Fima) From Porphyromonas Gingivalis W83 at 1.30 A Resolution (Psi Community Target, Nakayama)
  21. 4q9c (Na: 1) - Ignar Antibody Domain C3
    Other atoms: Cl (2);
  22. 4q9z (Na: 1) - Human Protein Kinase C Theta in Complex with COMPOUND35 ((1R)-9- (Azetidin-3-Ylamino)-1,8-Dimethyl-3,5-Dihydro[1,2,4]Triazino[3,4- C][1,4]Benzoxazin-2(1H)-One)
  23. 4qc4 (Na: 1) - Crystal Structure of C117S Mutant of Human Acidic Fibroblast Growth Factor
  24. 4qce (Na: 2) - Crystal Structure of Recombinant Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27
    Other atoms: Mg (2);
  25. 4qcf (Na: 1) - Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27
    Other atoms: Mg (1); Cl (3);
  26. 4qdm (Na: 2) - Crystal Structure of N-Terminal Mutant (V1L) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27
    Other atoms: Mg (2);
  27. 4qet (Na: 8) - Structure of Aldehyde Dehydrogenase From Bacillus Cereus, G224D Mutant
  28. 4qf6 (Na: 24) - Structure of Aldehyde Dehydrogenase From Bacillus Cereus, E194S Mutant
  29. 4qfd (Na: 2) - Co-Crystal Structure of Compound 2 (3-(7-Hydroxy-2-Oxo-4-Phenyl-2H- Chromen-6-Yl)Propanoic Acid) and Fad Bound to Human Daao at 2.85A
  30. 4qfe (Na: 4) - Crystal Structure of An Enoyl-Coa Hydratase From Mycobacterium Smegmatis
  31. 4qfm (Na: 1) - The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp
    Other atoms: Mg (1);
  32. 4qgp (Na: 2) - Crystal Structure of A Pyrophosphatase (AF1178) From Archaeoglobus Fulgidus Dsm 4304 at 1.80 A Resolution
    Other atoms: Mg (2); Cl (1);
  33. 4qh1 (Na: 1) - The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate
    Other atoms: Br (15);
  34. 4qh4 (Na: 1) - The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) Crystallized in Acetate Buffer at PH3
  35. 4qh5 (Na: 4) - The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) Crystallized in Phosphate Buffer
    Other atoms: Cl (5);
  36. 4qhh (Na: 1) - Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase
    Other atoms: Zn (1);
  37. 4qje (Na: 8) - 1.85 Angstrom Resolution Crystal Structure of Apo Betaine Aldehyde Dehydrogenase (Betb) G234S Mutant From Staphylococcus Aureus (IDP00699) with Bme-Free Sulfinic Acid Form of CYS289
  38. 4qku (Na: 4) - Crystal Structure of A Putative Hydrolase From Burkholderia Cenocepacia
  39. 4qkx (Na: 2) - Structure of BETA2 Adrenoceptor Bound to A Covalent Agonist and An Engineered Nanobody
  40. 4qm6 (Na: 5) - Structure of Bacterial Polynucleotide Kinase Bound to Gtp and Rna
    Other atoms: Mg (2);
Page generated: Tue Dec 1 10:40:57 2020

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