Atomistry » Sodium » PDB 4q3a-4qm6 » 4qhh
Atomistry »
  Sodium »
    PDB 4q3a-4qm6 »
      4qhh »

Sodium in PDB 4qhh: Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase

Protein crystallography data

The structure of Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase, PDB code: 4qhh was solved by M.Lopez-Pelegrin, N.Cerda-Costa, A.Cintas-Pedrola, F.Herranz-Trillo, P.Bernado, J.R.Peinado, J.L.Arolas, F.X.Gomis-Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.30 / 3.00
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 102.220, 102.220, 59.430, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 25.7

Other elements in 4qhh:

The structure of Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase (pdb code 4qhh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase, PDB code: 4qhh:

Sodium binding site 1 out of 1 in 4qhh

Go back to Sodium Binding Sites List in 4qhh
Sodium binding site 1 out of 1 in the Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Methanocaldococcus Jannaschii Tetrameric Selecase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:0.7
occ:0.50
OD1 A:ASN16 2.2 0.1 1.0
O A:HOH301 2.5 0.9 0.5
O1 A:GOL205 2.5 0.5 0.5
O3 A:GOL205 2.5 0.1 0.5
O2 A:GOL205 2.6 0.9 0.5
C3 A:GOL205 2.9 0.9 0.5
C2 A:GOL205 2.9 0.8 0.5
C1 A:GOL205 2.9 0.6 0.5
OD1 A:ASN19 3.3 0.8 1.0
CG A:ASN16 3.4 0.9 1.0
O A:ASN16 3.7 0.7 1.0
CA A:ASN16 4.3 0.8 1.0
ND2 A:ASN16 4.3 0.4 1.0
CB A:ASN16 4.3 0.1 1.0
C A:ASN16 4.4 0.5 1.0
CG A:ASN19 4.5 0.6 1.0

Reference:

M.Lopez-Pelegrin, N.Cerda-Costa, A.Cintas-Pedrola, F.Herranz-Trillo, P.Bernado, J.R.Peinado, J.L.Arolas, F.X.Gomis-Ruth. Multiple Stable Conformations Account For Reversible Concentration-Dependent Oligomerization and Autoinhibition of A Metamorphic Metallopeptidase Angew.Chem.Int.Ed.Engl. V. 53 10624 2014.
ISSN: ISSN 1433-7851
PubMed: 25159620
DOI: 10.1002/ANIE.201405727
Page generated: Tue Dec 15 07:05:32 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy