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Sodium in PDB 4q98: Crystal Structure of A Fimbrilin (Fima) From Porphyromonas Gingivalis W83 at 1.30 A Resolution (Psi Community Target, Nakayama)

Protein crystallography data

The structure of Crystal Structure of A Fimbrilin (Fima) From Porphyromonas Gingivalis W83 at 1.30 A Resolution (Psi Community Target, Nakayama), PDB code: 4q98 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.08 / 1.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.398, 67.641, 65.576, 90.00, 90.47, 90.00
R / Rfree (%) 11.9 / 15.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Fimbrilin (Fima) From Porphyromonas Gingivalis W83 at 1.30 A Resolution (Psi Community Target, Nakayama) (pdb code 4q98). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Fimbrilin (Fima) From Porphyromonas Gingivalis W83 at 1.30 A Resolution (Psi Community Target, Nakayama), PDB code: 4q98:

Sodium binding site 1 out of 1 in 4q98

Go back to Sodium Binding Sites List in 4q98
Sodium binding site 1 out of 1 in the Crystal Structure of A Fimbrilin (Fima) From Porphyromonas Gingivalis W83 at 1.30 A Resolution (Psi Community Target, Nakayama)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Fimbrilin (Fima) From Porphyromonas Gingivalis W83 at 1.30 A Resolution (Psi Community Target, Nakayama) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:21.1
occ:0.50
O A:HOH564 1.9 17.5 1.0
O A:HOH704 2.1 27.4 1.0
O A:HOH936 2.2 33.2 1.0
OD1 A:ASP240 2.3 14.7 1.0
O A:HOH1042 2.3 36.7 1.0
O A:HOH691 2.5 26.6 1.0
CG A:ASP240 3.2 13.8 1.0
OD2 A:ASP240 3.5 18.3 1.0
OE1 A:GLU274 3.7 29.6 1.0
O A:GLY235 3.9 11.9 1.0
O A:HOH839 4.0 47.5 1.0
O A:THR238 4.1 11.1 1.0
OE2 A:GLU274 4.2 39.5 1.0
CD A:GLU274 4.4 27.3 1.0
CB A:ASP240 4.6 14.6 1.0
O A:HOH927 4.7 47.1 1.0
O A:LEU236 4.7 12.9 1.0
C A:ASP240 4.8 11.7 1.0
NH2 A:ARG276 4.8 12.0 1.0
N A:ALA241 4.9 11.3 1.0
N A:ASP240 4.9 11.1 1.0
C A:GLY235 4.9 11.0 1.0
CA A:ASP240 5.0 11.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Dec 15 07:05:09 2020

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