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Sodium in PDB 4qcf: Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 4qcf was solved by P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.78 / 2.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.570, 80.120, 69.900, 90.00, 110.81, 90.00
R / Rfree (%) 17.4 / 22.5

Other elements in 4qcf:

The structure of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 4qcf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 4qcf:

Sodium binding site 1 out of 1 in 4qcf

Go back to Sodium Binding Sites List in 4qcf
Sodium binding site 1 out of 1 in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na405

b:32.7
occ:1.00
 O A:ASP302 2.3 27.6 1.0
O A:LEU305 2.5 23.3 1.0
O A:SER18 2.5 24.3 1.0
O A:HOH627 2.5 27.2 1.0
C A:LEU305 3.4 22.6 1.0
C A:ASP302 3.5 28.2 1.0
C A:SER18 3.6 23.9 1.0
CA A:SER306 3.8 21.7 1.0
N A:SER306 4.0 21.9 1.0
CA A:ASP302 4.3 27.8 1.0
N A:LEU305 4.3 24.3 1.0
CB A:ASP302 4.4 27.8 1.0
N A:ALA303 4.5 28.8 1.0
CA A:LEU305 4.5 23.1 1.0
CA A:SER18 4.5 25.1 1.0
N A:PHE19 4.5 22.7 1.0
CA A:ALA303 4.6 29.5 1.0
CA A:PHE19 4.6 21.9 1.0
CB A:PHE19 4.7 21.4 1.0
C A:ALA303 4.7 28.6 1.0
CB A:SER306 4.7 22.1 1.0
O A:ALA303 4.8 28.9 1.0
C A:SER306 4.8 20.8 1.0

Reference:

P.Mahanta, A.Bhardwaj, K.Kumar, V.S.Reddy, S.Ramakumar. Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Mon Oct 7 17:58:10 2024

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