Sodium in PDB 4q4x: Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL)

The structure of Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL), PDB code: 4q4x was solved by G.Zocher, T.Stehle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.95 / 1.65
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	306.398, 366.096, 367.700, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / n/a

The structure of Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL) also contains other interesting chemical elements:

Chlorine	(Cl)	5 atoms
Calcium	(Ca)	5 atoms

The binding sites of Sodium atom in the Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL) (pdb code 4q4x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL), PDB code: 4q4x:

Sodium binding site 1 out of 1 in the Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Coxsackievirus A24V Soaked with 6'-Sialyllactose (6SL) within 5.0Å range: probe atom residue distance (Å) B Occ 1:Na5004 b:27.1 occ:1.00 O 1:ASN68 2.3 24.0 1.0 OG1 1:THR26 2.5 29.2 1.0 OG 1:SER29 2.5 23.9 1.0 O 1:ALA27 2.8 21.9 1.0 O 1:HOH6133 3.3 42.5 1.0 C 1:ASN68 3.4 21.0 1.0 O 1:HOH6090 3.5 32.2 1.0 CB 1:THR26 3.5 26.9 1.0 N 1:SER29 3.7 21.7 1.0 CB 1:SER29 3.7 22.5 1.0 CB 1:ASN68 3.8 21.5 1.0 CA 1:ASN68 3.9 21.1 1.0 N 1:ASN68 4.0 20.4 1.0 C 1:ALA27 4.0 23.2 1.0 CA 1:SER29 4.2 22.1 1.0 C 1:GLN28 4.2 22.6 1.0 CG2 1:THR26 4.4 28.6 1.0 C 1:THR26 4.5 25.9 1.0 CA 1:GLN28 4.5 22.7 1.0 CA 1:THR26 4.6 25.7 1.0 N 1:TYR69 4.6 21.9 1.0 CG 1:ASN68 4.7 22.3 1.0 O 1:THR26 4.7 25.2 1.0 N 1:GLN28 4.8 21.7 1.0 N 1:ALA27 4.8 23.0 1.0 O 1:GLN28 4.9 21.5 1.0

G.Zocher, N.Mistry, M.Frank, I.Hahnlein-Schick, J.O.Ekstrom, N.Arnberg, T.Stehle. A Sialic Acid Binding Site in A Human Picornavirus. Plos Pathog. V. 10 04401 2014.
ISSN: ISSN 1553-7366
PubMed: 25329320
DOI: 10.1371/JOURNAL.PPAT.1004401