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Sodium in PDB 4qfm: The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp

Protein crystallography data

The structure of The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4qfm was solved by O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.69 / 2.30
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 186.740, 186.740, 186.740, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.6

Other elements in 4qfm:

The structure of The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp (pdb code 4qfm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4qfm:

Sodium binding site 1 out of 1 in 4qfm

Go back to Sodium Binding Sites List in 4qfm
Sodium binding site 1 out of 1 in the The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na524

b:44.5
occ:1.00
O A:HOH825 2.3 39.5 1.0
O A:MET111 2.3 31.6 1.0
O A:HOH894 2.4 31.5 1.0
O A:HOH726 2.5 49.0 1.0
O A:HOH864 2.6 36.2 1.0
O A:HOH774 2.8 41.3 1.0
O A:HOH941 3.0 39.2 1.0
C A:MET111 3.5 31.7 1.0
O A:HOH827 4.2 47.1 1.0
CA A:ASP112 4.2 32.9 1.0
N A:ASP112 4.3 24.1 1.0
N A:MET111 4.4 27.4 1.0
OD1 A:ASP112 4.5 37.7 1.0
CA A:MET111 4.5 32.6 1.0
O A:HOH846 4.6 35.2 1.0
O A:ALA109 4.6 30.9 1.0
O A:HOH751 4.6 38.2 1.0
O A:HOH694 4.7 39.8 1.0
O A:HOH919 4.7 45.2 1.0
O A:ALA108 4.8 24.3 1.0
CG2 A:VAL141 4.9 23.9 1.0
C A:LEU110 5.0 27.6 1.0

Reference:

O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov. The Structure of AIF2GAMMA Subunit D152A From Archaeon Sulfolobus Solfataricus Complexed with Gdpcp To Be Published.
Page generated: Mon Oct 7 17:58:58 2024

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