Atomistry » Sodium » PDB 4q3a-4qm6 » 4qh1
Atomistry »
  Sodium »
    PDB 4q3a-4qm6 »
      4qh1 »

Sodium in PDB 4qh1: The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate

Protein crystallography data

The structure of The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate, PDB code: 4qh1 was solved by Z.Fourati, M.Delarue, L.Sauguet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 181.431, 134.021, 158.861, 90.00, 101.86, 90.00
R / Rfree (%) 20.2 / 22.5

Other elements in 4qh1:

The structure of The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate also contains other interesting chemical elements:

Bromine (Br) 15 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate (pdb code 4qh1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate, PDB code: 4qh1:

Sodium binding site 1 out of 1 in 4qh1

Go back to Sodium Binding Sites List in 4qh1
Sodium binding site 1 out of 1 in the The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Glic Pentameric Ligand-Gated Ion Channel (Wild-Type) in Complex with Bromoacetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na404

b:0.2
occ:1.00
OG1 A:THR226 3.2 0.0 1.0
OG1 E:THR226 3.7 0.3 1.0
CG2 E:THR226 4.4 89.5 1.0
CB A:THR226 4.5 0.1 1.0
OG1 B:THR226 4.5 0.9 1.0
CG2 A:THR226 4.6 0.9 1.0
CB E:THR226 4.6 100.0 1.0
O A:GLU222 4.7 0.6 1.0
OG1 D:THR226 5.0 0.1 1.0

Reference:

Z.Fourati, M.Delarue, L.Sauguet. Structural Characterization of Potential Modulation Sites in the Extracellular Domain of the Prokaryotic Pentameric Proton-Gated Ion Channel Glic Acta Crystallogr.,Sect.D 2015.
ISSN: ESSN 1399-0047
Page generated: Tue Dec 15 07:05:30 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy