Atomistry » Sodium » PDB 4q3d-4qom » 4q68
Atomistry »
  Sodium »
    PDB 4q3d-4qom »
      4q68 »

Sodium in PDB 4q68: Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution, PDB code: 4q68 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.35 / 1.07
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.473, 63.552, 73.997, 90.00, 90.00, 90.00
R / Rfree (%) 11 / 13.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution (pdb code 4q68). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution, PDB code: 4q68:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in 4q68

Go back to Sodium Binding Sites List in 4q68
Sodium binding site 1 out of 3 in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:9.9
occ:1.00
O A:LEU208 2.2 7.5 1.0
O A:HOH922 2.4 12.8 1.0
O A:HOH595 2.4 17.7 1.0
O A:HOH532 2.5 18.8 1.0
O A:THR203 2.5 7.8 1.0
O A:THR205 2.6 6.4 1.0
C A:LEU208 3.4 6.0 1.0
C A:THR203 3.6 6.6 1.0
C A:THR205 3.6 6.2 1.0
C A:ASN204 3.7 7.1 1.0
N A:THR205 3.8 6.4 1.0
N A:LEU208 3.8 5.8 1.0
CA A:ASN204 3.9 7.3 1.0
O A:HOH510 3.9 16.1 1.0
O A:HOH729 3.9 13.3 1.0
O A:ASN204 4.1 8.1 1.0
N A:ASN204 4.1 6.5 1.0
CA A:LEU208 4.2 5.9 1.0
O A:HOH432 4.3 10.7 1.0
CA A:THR205 4.3 6.6 1.0
CG2 A:THR203 4.3 7.1 1.0
N A:ASP209 4.3 5.4 1.0
O A:HOH584 4.3 11.4 1.0
CA A:ASP209 4.5 5.2 1.0
N A:GLY207 4.5 6.2 1.0
N A:PRO206 4.5 6.3 1.0
CA A:PRO206 4.7 6.6 1.0
CA A:THR203 4.7 6.4 1.0
CB A:LEU208 4.8 6.9 1.0
O A:HOH662 4.8 16.0 0.7
C A:PRO206 4.8 6.0 1.0
O A:HOH459 4.8 8.9 1.0
C A:GLY207 4.9 5.6 1.0
CB A:THR205 4.9 7.1 1.0
O A:SER141 5.0 7.8 1.0
CB A:THR203 5.0 6.7 1.0

Sodium binding site 2 out of 3 in 4q68

Go back to Sodium Binding Sites List in 4q68
Sodium binding site 2 out of 3 in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:15.8
occ:0.70
OE1 A:GLU138 2.4 9.5 0.5
O A:HOH716 2.7 18.6 1.0
O A:HOH732 2.7 15.4 1.0
O A:HOH772 2.7 14.7 1.0
O A:HOH802 2.9 10.6 0.5
CB A:GLU138 3.3 7.8 0.5
CD A:GLU138 3.5 8.4 0.5
OH A:TYR179 3.5 10.6 1.0
O A:HOH459 3.6 8.9 1.0
CZ A:TYR179 3.7 8.7 1.0
O A:HOH584 3.9 11.4 1.0
CG A:GLU138 3.9 7.8 0.5
CE1 A:TYR179 4.1 8.4 1.0
CB A:GLU138 4.1 8.6 0.5
CG A:GLU138 4.2 9.2 0.5
CE2 A:TYR179 4.2 8.7 1.0
CD A:GLU138 4.4 10.2 0.5
O A:HOH567 4.4 20.8 1.0
OE2 A:GLU138 4.6 9.5 0.5
CA A:GLU138 4.6 8.0 0.5
OE1 A:GLU138 4.6 11.4 0.5
O A:HOH418 4.7 9.0 1.0
CA A:GLU138 4.7 8.4 0.5
O A:HOH779 4.7 9.0 0.5
OE2 A:GLU138 4.9 10.5 0.5
O A:HOH503 4.9 16.0 1.0
CD1 A:TYR179 4.9 7.6 1.0
OG1 A:THR253 4.9 7.6 1.0
CD2 A:TYR179 5.0 7.6 1.0

Sodium binding site 3 out of 3 in 4q68

Go back to Sodium Binding Sites List in 4q68
Sodium binding site 3 out of 3 in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:15.1
occ:0.70
O A:HOH811 2.4 15.1 0.6
O A:HOH650 2.4 17.3 1.0
O A:HOH812 2.4 26.0 1.0
O A:HOH938 3.0 37.0 1.0
NZ A:LYS222 3.8 15.7 1.0
O A:ASP220 4.2 13.6 1.0
O A:HOH486 4.4 12.3 1.0
OD2 A:ASP188 4.5 13.9 1.0
OD1 A:ASP188 4.7 13.3 1.0
OD2 A:ASP220 4.8 16.1 1.0
CE A:LYS222 4.9 14.1 1.0
CB A:ASN221 5.0 14.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Dec 15 07:05:05 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy