Sodium in PDB 4q68: Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution

The structure of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution, PDB code: 4q68 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.35 / 1.07
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.473, 63.552, 73.997, 90.00, 90.00, 90.00
R / Rfree (%)	11 / 13.8

The binding sites of Sodium atom in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution (pdb code 4q68). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution, PDB code: 4q68:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:9.9 occ:1.00 O A:LEU208 2.2 7.5 1.0 O A:HOH922 2.4 12.8 1.0 O A:HOH595 2.4 17.7 1.0 O A:HOH532 2.5 18.8 1.0 O A:THR203 2.5 7.8 1.0 O A:THR205 2.6 6.4 1.0 C A:LEU208 3.4 6.0 1.0 C A:THR203 3.6 6.6 1.0 C A:THR205 3.6 6.2 1.0 C A:ASN204 3.7 7.1 1.0 N A:THR205 3.8 6.4 1.0 N A:LEU208 3.8 5.8 1.0 CA A:ASN204 3.9 7.3 1.0 O A:HOH510 3.9 16.1 1.0 O A:HOH729 3.9 13.3 1.0 O A:ASN204 4.1 8.1 1.0 N A:ASN204 4.1 6.5 1.0 CA A:LEU208 4.2 5.9 1.0 O A:HOH432 4.3 10.7 1.0 CA A:THR205 4.3 6.6 1.0 CG2 A:THR203 4.3 7.1 1.0 N A:ASP209 4.3 5.4 1.0 O A:HOH584 4.3 11.4 1.0 CA A:ASP209 4.5 5.2 1.0 N A:GLY207 4.5 6.2 1.0 N A:PRO206 4.5 6.3 1.0 CA A:PRO206 4.7 6.6 1.0 CA A:THR203 4.7 6.4 1.0 CB A:LEU208 4.8 6.9 1.0 O A:HOH662 4.8 16.0 0.7 C A:PRO206 4.8 6.0 1.0 O A:HOH459 4.8 8.9 1.0 C A:GLY207 4.9 5.6 1.0 CB A:THR205 4.9 7.1 1.0 O A:SER141 5.0 7.8 1.0 CB A:THR203 5.0 6.7 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na303 b:15.8 occ:0.70 OE1 A:GLU138 2.4 9.5 0.5 O A:HOH716 2.7 18.6 1.0 O A:HOH732 2.7 15.4 1.0 O A:HOH772 2.7 14.7 1.0 O A:HOH802 2.9 10.6 0.5 CB A:GLU138 3.3 7.8 0.5 CD A:GLU138 3.5 8.4 0.5 OH A:TYR179 3.5 10.6 1.0 O A:HOH459 3.6 8.9 1.0 CZ A:TYR179 3.7 8.7 1.0 O A:HOH584 3.9 11.4 1.0 CG A:GLU138 3.9 7.8 0.5 CE1 A:TYR179 4.1 8.4 1.0 CB A:GLU138 4.1 8.6 0.5 CG A:GLU138 4.2 9.2 0.5 CE2 A:TYR179 4.2 8.7 1.0 CD A:GLU138 4.4 10.2 0.5 O A:HOH567 4.4 20.8 1.0 OE2 A:GLU138 4.6 9.5 0.5 CA A:GLU138 4.6 8.0 0.5 OE1 A:GLU138 4.6 11.4 0.5 O A:HOH418 4.7 9.0 1.0 CA A:GLU138 4.7 8.4 0.5 O A:HOH779 4.7 9.0 0.5 OE2 A:GLU138 4.9 10.5 0.5 O A:HOH503 4.9 16.0 1.0 CD1 A:TYR179 4.9 7.6 1.0 OG1 A:THR253 4.9 7.6 1.0 CD2 A:TYR179 5.0 7.6 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of A Hypothetical Protein (BACUNI_02947) From Bacteroides Uniformis Atcc 8492 at 1.07 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:15.1 occ:0.70 O A:HOH811 2.4 15.1 0.6 O A:HOH650 2.4 17.3 1.0 O A:HOH812 2.4 26.0 1.0 O A:HOH938 3.0 37.0 1.0 NZ A:LYS222 3.8 15.7 1.0 O A:ASP220 4.2 13.6 1.0 O A:HOH486 4.4 12.3 1.0 OD2 A:ASP188 4.5 13.9 1.0 OD1 A:ASP188 4.7 13.3 1.0 OD2 A:ASP220 4.8 16.1 1.0 CE A:LYS222 4.9 14.1 1.0 CB A:ASN221 5.0 14.9 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.