Sodium in PDB 4q69: Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution

The structure of Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution, PDB code: 4q69 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	89.67 / 2.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	135.124, 135.124, 139.567, 90.00, 90.00, 120.00
R / Rfree (%)	17.2 / 19.9

The structure of Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution (pdb code 4q69). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution, PDB code: 4q69:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:44.2 occ:1.00 OD1 A:ASP487 2.3 47.4 1.0 O A:GLY436 2.3 48.2 1.0 O A:ARG433 2.3 38.6 1.0 O A:HOH623 2.4 34.4 1.0 O A:LEU488 2.7 51.5 1.0 OE2 A:GLU441 2.8 43.6 1.0 CG A:ASP487 3.5 45.0 1.0 C A:ARG433 3.5 34.2 1.0 C A:GLY436 3.5 49.5 1.0 N A:LEU488 3.7 51.1 1.0 C A:LEU488 3.8 60.0 1.0 NH1 A:ARG458 3.8 45.6 1.0 CD A:GLU441 3.9 46.5 1.0 O A:HOH704 4.0 47.4 1.0 OD2 A:ASP487 4.2 38.4 1.0 CG A:GLU441 4.2 45.1 1.0 CA A:THR437 4.2 57.0 1.0 CA A:ARG433 4.3 33.6 1.0 N A:THR437 4.3 52.2 1.0 CA A:LEU488 4.3 59.4 1.0 C A:ASP487 4.3 47.7 1.0 CA A:ASP487 4.4 43.9 1.0 N A:GLY436 4.5 45.8 1.0 CB A:ASP487 4.5 43.8 1.0 N A:ARG434 4.5 34.6 1.0 CA A:GLY436 4.6 48.1 1.0 O A:HOH710 4.7 38.6 1.0 CA A:ARG434 4.8 36.0 1.0 OXT A:LEU488 4.8 55.2 1.0 C A:ARG434 4.8 40.2 1.0 CB A:ARG433 4.9 34.4 1.0 CZ A:ARG458 4.9 45.2 1.0 O A:ARG434 4.9 36.7 1.0 OE1 A:GLU441 4.9 48.4 1.0 CE A:LYS483 5.0 53.5 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Susd Homolog (BT2259) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.50 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na500 b:58.7 occ:1.00 O B:GLY436 2.2 51.2 1.0 OD1 B:ASP487 2.4 49.7 1.0 O B:ARG433 2.5 46.3 1.0 O B:LEU488 2.5 64.2 1.0 O B:HOH698 2.7 39.7 1.0 OE2 B:GLU441 2.8 55.3 1.0 C B:GLY436 3.4 53.9 1.0 CG B:ASP487 3.6 45.2 1.0 C B:LEU488 3.6 63.7 1.0 C B:ARG433 3.7 40.6 1.0 N B:LEU488 3.7 53.8 1.0 CD B:GLU441 3.8 55.4 1.0 NH1 B:ARG458 3.9 49.8 1.0 CA B:THR437 4.1 68.9 1.0 CG B:GLU441 4.2 53.7 1.0 N B:THR437 4.2 63.6 1.0 CA B:LEU488 4.2 62.9 1.0 OD2 B:ASP487 4.3 42.1 1.0 C B:ASP487 4.4 49.2 1.0 CA B:ARG433 4.4 38.4 1.0 N B:GLY436 4.4 47.8 1.0 CA B:GLY436 4.5 50.5 1.0 CA B:ASP487 4.5 45.0 1.0 OXT B:LEU488 4.6 60.6 1.0 CB B:ASP487 4.6 43.4 1.0 N B:ARG434 4.7 39.0 1.0 OE1 B:GLU441 4.9 55.4 1.0 CA B:ARG434 4.9 39.7 1.0 CB B:LEU488 4.9 65.5 1.0 C B:ARG434 4.9 43.6 1.0 CE B:LYS483 4.9 50.7 1.0 CZ B:ARG458 4.9 52.6 1.0 O B:HOH737 4.9 45.1 1.0 C B:THR437 4.9 68.9 1.0 N B:ALA438 5.0 76.7 1.0 O B:ARG434 5.0 44.2 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.