Atomistry » Sodium » PDB 4def-4dxz
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Sodium in PDB, part 96 (files: 3801-3840), PDB 4def-4dxz

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 3801-3840 (PDB 4def-4dxz).
  1. 4def (Na: 1) - Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis
    Other atoms: Zn (2);
  2. 4del (Na: 1) - Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis
    Other atoms: Zn (2);
  3. 4df2 (Na: 2) - P. Stipitis OYE2.6 Complexed with P-Chlorophenol
    Other atoms: Cl (1);
  4. 4df9 (Na: 6) - Crystal Structure of A Putative Peptidase (BF3526) From Bacteroides Fragilis Nctc 9343 at 2.17 A Resolution
    Other atoms: Zn (12); Cl (15);
  5. 4dfg (Na: 2) - Crystal Structure of Wild-Type Hiv-1 Protease with Cyclopentyltetrahydro- Furanyl Urethanes As P2-Ligand, Grl-0249A
    Other atoms: Cl (4);
  6. 4dgi (Na: 1) - Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230
  7. 4dgv (Na: 1) - Structure of the Hepatitis C Virus Envelope Glycoprotein E2 Antigenic Region 412-423 Bound to the Broadly Neutralizing Antibody HCV1, P2(1) Form
    Other atoms: K (1);
  8. 4dhy (Na: 1) - Crystal Structure of Human Glucokinase in Complex with Glucose and Activator
  9. 4dih (Na: 3) - X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
    Other atoms: Zn (3); Cl (2);
  10. 4dii (Na: 1) - X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Potassium Ions
    Other atoms: K (1); Zn (2); Cl (2);
  11. 4dip (Na: 1) - Crystal Structure of Human Peptidyl-Prolyl Cis-Trans Isomerase FKBP14
  12. 4dj4 (Na: 1) - X-Ray Structure of Mutant N211D of Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato)
    Other atoms: Cl (2); Zn (6);
  13. 4dja (Na: 1) - Crystal Structure of A Prokaryotic (6-4) Photolyase Phrb From Agrobacterium Tumefaciens with An Fe-S Cluster and A 6,7-Dimethyl-8- Ribityllumazine Antenna Chromophore at 1.45A Resolution
    Other atoms: Fe (4);
  14. 4djt (Na: 1) - Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+
    Other atoms: Mg (2);
  15. 4dk4 (Na: 2) - Crystal Structure of Trypanosoma Brucei Dutpase with Dupnp, CA2+ and Na+
    Other atoms: Ca (4);
  16. 4dka (Na: 2) - Structure of Editosome Protein
  17. 4dl8 (Na: 1) - Crystal Structure of Trypanosoma Brucei Dutpase with Dump, Planar [ALF3-OPO3] Transition State Analogue, MG2+, and Na+
    Other atoms: F (3); Mg (2); Al (1);
  18. 4dmi (Na: 4) - Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences (Casp)
  19. 4dn0 (Na: 2) - Peld 156-455 From Pseudomonas Aeruginosa PA14 in Complex with C-Di-Gmp
  20. 4dnl (Na: 1) - Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution
  21. 4do9 (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Stereoselective Binding of R-Isomer
    Other atoms: F (1); Mg (1); Cl (5);
  22. 4doa (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Non-Interactive Binding of S-Isomer
    Other atoms: F (1); Mg (1); Cl (5);
  23. 4dob (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate: Stereoselective Binding of R-Isomer
    Other atoms: Mg (1); Cl (6);
  24. 4doc (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate:Binding of S-Isomer
    Other atoms: Mg (1); Cl (6);
  25. 4dou (Na: 1) - Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain
    Other atoms: Ca (3);
  26. 4dpp (Na: 5) - The Structure of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana
  27. 4dpq (Na: 5) - The Structure of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana in Complex with (S)-Lysine
  28. 4dq9 (Na: 2) - Crystal Structure of the Minor Pseudopilin Epsh From the Type II Secretion System of Vibrio Cholerae
    Other atoms: Cl (1);
  29. 4drr (Na: 1) - Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen
  30. 4drt (Na: 1) - Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89
    Other atoms: Cl (1);
  31. 4dt7 (Na: 2) - Crystal Structure of Thrombin Bound to the Activation Domain Qedqvdprlidgkmtrrgds of Protein C
  32. 4duv (Na: 16) - E. Coli (Lacz) Beta-Galactosidase (G974A) 2-Deoxy-Galactosyl-Enzyme and Bis-Tris Complex
    Other atoms: Mg (9);
  33. 4duw (Na: 16) - E. Coli (Lacz) Beta-Galactosidase (G974A) in Complex with Allolactose
    Other atoms: Mg (10);
  34. 4dux (Na: 14) - E. Coli (Lacz) Beta-Galactosidase (N460S) in Complex with L-Ribose
    Other atoms: Mg (8);
  35. 4dw8 (Na: 1) - Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I
  36. 4dwb (Na: 1) - Crystal Structure of Trypanosoma Cruzi Farnesyl Diphosphate Synthase in Complex with [2-(N-Pentylamino)Ethane-1,1-Diyl]Bisphosphonic Acid and MG2+
    Other atoms: Mg (3);
  37. 4dwg (Na: 2) - Crystal Structure of Trypanosome Cruzi Farnesyl Diphosphate Synthase in Complex with [2-(N-Heptylamino)Ethane-1,1-Diyl]Bisphosphonic Acid and MG2+
    Other atoms: Mg (3);
  38. 4dxk (Na: 1) - Crystal Structure of An Enolase (Mandelate Racemase Subgroup, Target Efi-502086) From Agrobacterium Tumefaciens, with A Succinimide Residue, Na and Phosphate
  39. 4dxo (Na: 1) - Crystal Structure of A Reconstructed Kaede-Type Red Fluorescent Protein, Lea X(6)
  40. 4dxz (Na: 3) - Crystal Structure of A Plig-Ec Mutant, A Periplasmic Lysozyme Inhibitor of G-Type Lysozyme From Escherichia Coli
Page generated: Fri Dec 24 09:44:41 2021

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