Sodium in PDB, part 96 (files: 3801-3840),
PDB 4def-4dxz
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 3801-3840 (PDB 4def-4dxz).
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4def (Na: 1) - Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis
Other atoms:
Zn (2);
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4del (Na: 1) - Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis
Other atoms:
Zn (2);
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4df2 (Na: 2) - P. Stipitis OYE2.6 Complexed with P-Chlorophenol
Other atoms:
Cl (1);
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4df9 (Na: 6) - Crystal Structure of A Putative Peptidase (BF3526) From Bacteroides Fragilis Nctc 9343 at 2.17 A Resolution
Other atoms:
Zn (12);
Cl (15);
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4dfg (Na: 2) - Crystal Structure of Wild-Type Hiv-1 Protease with Cyclopentyltetrahydro- Furanyl Urethanes As P2-Ligand, Grl-0249A
Other atoms:
Cl (4);
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4dgi (Na: 1) - Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230
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4dgv (Na: 1) - Structure of the Hepatitis C Virus Envelope Glycoprotein E2 Antigenic Region 412-423 Bound to the Broadly Neutralizing Antibody HCV1, P2(1) Form
Other atoms:
K (1);
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4dhy (Na: 1) - Crystal Structure of Human Glucokinase in Complex with Glucose and Activator
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4dih (Na: 3) - X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
Other atoms:
Zn (3);
Cl (2);
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4dii (Na: 1) - X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Potassium Ions
Other atoms:
K (1);
Zn (2);
Cl (2);
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4dip (Na: 1) - Crystal Structure of Human Peptidyl-Prolyl Cis-Trans Isomerase FKBP14
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4dj4 (Na: 1) - X-Ray Structure of Mutant N211D of Bifunctional Nuclease TBN1 From Solanum Lycopersicum (Tomato)
Other atoms:
Cl (2);
Zn (6);
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4dja (Na: 1) - Crystal Structure of A Prokaryotic (6-4) Photolyase Phrb From Agrobacterium Tumefaciens with An Fe-S Cluster and A 6,7-Dimethyl-8- Ribityllumazine Antenna Chromophore at 1.45A Resolution
Other atoms:
Fe (4);
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4djt (Na: 1) - Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+
Other atoms:
Mg (2);
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4dk4 (Na: 2) - Crystal Structure of Trypanosoma Brucei Dutpase with Dupnp, CA2+ and Na+
Other atoms:
Ca (4);
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4dka (Na: 2) - Structure of Editosome Protein
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4dl8 (Na: 1) - Crystal Structure of Trypanosoma Brucei Dutpase with Dump, Planar [ALF3-OPO3] Transition State Analogue, MG2+, and Na+
Other atoms:
F (3);
Mg (2);
Al (1);
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4dmi (Na: 4) - Crystal Structure of A Pentameric Capsid Protein Isolated From Metagenomic Phage Sequences (Casp)
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4dn0 (Na: 2) - Peld 156-455 From Pseudomonas Aeruginosa PA14 in Complex with C-Di-Gmp
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4dnl (Na: 1) - Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution
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4do9 (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Stereoselective Binding of R-Isomer
Other atoms:
F (1);
Mg (1);
Cl (5);
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4doa (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monofluoromethylene Triphosphate: Non-Interactive Binding of S-Isomer
Other atoms:
F (1);
Mg (1);
Cl (5);
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4dob (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate: Stereoselective Binding of R-Isomer
Other atoms:
Mg (1);
Cl (6);
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4doc (Na: 3) - Ternary Complex of Dna Polymerase Beta with A Dideoxy Terminated Primer and 2'-Deoxyguanosine 5'-Beta, Gamma-Monochlororomethylene Triphosphate:Binding of S-Isomer
Other atoms:
Mg (1);
Cl (6);
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4dou (Na: 1) - Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain
Other atoms:
Ca (3);
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4dpp (Na: 5) - The Structure of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana
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4dpq (Na: 5) - The Structure of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana in Complex with (S)-Lysine
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4dq9 (Na: 2) - Crystal Structure of the Minor Pseudopilin Epsh From the Type II Secretion System of Vibrio Cholerae
Other atoms:
Cl (1);
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4drr (Na: 1) - Cell Attachment Protein VP8* of A Human Rotavirus Specifically Interacts with A-Type Histo-Blood Group Antigen
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4drt (Na: 1) - Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89
Other atoms:
Cl (1);
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4dt7 (Na: 2) - Crystal Structure of Thrombin Bound to the Activation Domain Qedqvdprlidgkmtrrgds of Protein C
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4duv (Na: 16) - E. Coli (Lacz) Beta-Galactosidase (G974A) 2-Deoxy-Galactosyl-Enzyme and Bis-Tris Complex
Other atoms:
Mg (9);
-
4duw (Na: 16) - E. Coli (Lacz) Beta-Galactosidase (G974A) in Complex with Allolactose
Other atoms:
Mg (10);
-
4dux (Na: 14) - E. Coli (Lacz) Beta-Galactosidase (N460S) in Complex with L-Ribose
Other atoms:
Mg (8);
-
4dw8 (Na: 1) - Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I
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4dwb (Na: 1) - Crystal Structure of Trypanosoma Cruzi Farnesyl Diphosphate Synthase in Complex with [2-(N-Pentylamino)Ethane-1,1-Diyl]Bisphosphonic Acid and MG2+
Other atoms:
Mg (3);
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4dwg (Na: 2) - Crystal Structure of Trypanosome Cruzi Farnesyl Diphosphate Synthase in Complex with [2-(N-Heptylamino)Ethane-1,1-Diyl]Bisphosphonic Acid and MG2+
Other atoms:
Mg (3);
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4dxk (Na: 1) - Crystal Structure of An Enolase (Mandelate Racemase Subgroup, Target Efi-502086) From Agrobacterium Tumefaciens, with A Succinimide Residue, Na and Phosphate
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4dxo (Na: 1) - Crystal Structure of A Reconstructed Kaede-Type Red Fluorescent Protein, Lea X(6)
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4dxz (Na: 3) - Crystal Structure of A Plig-Ec Mutant, A Periplasmic Lysozyme Inhibitor of G-Type Lysozyme From Escherichia Coli
Page generated: Thu Dec 28 11:18:31 2023
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