Sodium in PDB 4dgi: Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230

The structure of Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230, PDB code: 4dgi was solved by P.K.Baral, B.Wieland, M.Swayampakula, M.N.James, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.19 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.530, 105.920, 76.230, 90.00, 95.08, 90.00
R / Rfree (%)	25.8 / 28.9

The binding sites of Sodium atom in the Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230 (pdb code 4dgi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230, PDB code: 4dgi:

Sodium binding site 1 out of 1 in the Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of POM1 Fab Fragment Complexed with Human Prpc Fragment 120- 230 within 5.0Å range: probe atom residue distance (Å) B Occ L:Na300 b:24.1 occ:1.00 OE1 L:GLU81 2.5 76.4 1.0 OE1 L:GLU79 2.5 65.3 1.0 CD L:GLU79 3.3 70.3 1.0 OE2 L:GLU79 3.4 73.7 1.0 CD L:GLU81 3.4 76.9 1.0 OE2 L:GLU81 3.5 83.4 1.0 NH2 L:ARG61 4.5 58.9 1.0 NH1 L:ARG61 4.6 66.9 1.0 CG L:GLU79 4.8 66.3 1.0 CG L:GLU81 4.8 63.4 1.0 CZ L:ARG61 5.0 66.5 1.0

P.K.Baral, B.Wieland, M.Swayampakula, M.Polymenidou, M.H.Rahman, N.N.Kav, A.Aguzzi, M.N.James. Structural Studies on the Folded Domain of the Human Prion Protein Bound to the Fab Fragment of the Antibody POM1. Acta Crystallogr.,Sect.D V. 68 1501 2012.
ISSN: ISSN 0907-4449
PubMed: 23090399
DOI: 10.1107/S0907444912037328