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Sodium in PDB 4def: Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis

Enzymatic activity of Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis

All present enzymatic activity of Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis:
4.1.2.13;

Protein crystallography data

The structure of Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis, PDB code: 4def was solved by G.C.Capodagli, S.D.Pegan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.34 / 1.64
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 60.655, 119.708, 164.826, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 19.9

Other elements in 4def:

The structure of Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis (pdb code 4def). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis, PDB code: 4def:

Sodium binding site 1 out of 1 in 4def

Go back to Sodium Binding Sites List in 4def
Sodium binding site 1 out of 1 in the Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From M. Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:58.3
occ:1.00
 O A:SER255 2.8 44.1 1.0
O A:VAL211 2.8 58.7 1.0
OXT A:ACT404 2.9 51.3 1.0
O A:GLY213 3.1 76.2 1.0
O A:GLY253 3.4 39.8 1.0
N A:GLY213 3.5 69.0 1.0
O A:HOH743 3.5 37.6 1.0
C A:GLY253 3.6 38.8 1.0
C A:GLY213 3.6 74.3 1.0
CA A:GLY253 3.7 38.2 1.0
C A:SER255 3.9 43.0 1.0
C A:VAL211 4.0 59.1 1.0
C A:ACT404 4.1 47.5 1.0
CA A:GLY213 4.1 70.8 1.0
C A:HIS212 4.1 65.2 1.0
O A:HOH567 4.1 52.4 1.0
N A:SER255 4.3 40.9 1.0
CA A:HIS212 4.3 62.4 1.0
N A:VAL214 4.4 75.3 1.0
N A:GLY254 4.4 40.5 1.0
CA A:SER255 4.4 40.2 1.0
CG2 A:VAL214 4.6 68.2 1.0
CB A:SER255 4.6 37.8 1.0
N A:HIS212 4.6 60.3 1.0
O A:ACT404 4.7 48.5 1.0
C A:GLY254 4.7 41.6 1.0
O A:HOH575 4.7 67.2 1.0
CA A:VAL214 4.8 75.8 1.0
O A:HIS212 5.0 64.2 1.0
N A:GLY256 5.0 45.7 1.0

Reference:

S.D.Pegan, K.Rukseree, G.C.Capodagli, E.A.Baker, O.Krasnykh, S.G.Franzblau, A.D.Mesecar. Active Site Loop Dynamics of A Class Iia Fructose 1,6-Bisphosphate Aldolase From Mycobacterium Tuberculosis. Biochemistry V. 52 912 2013.
ISSN: ISSN 0006-2960
PubMed: 23298222
DOI: 10.1021/BI300928U
Page generated: Mon Oct 7 14:56:20 2024

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