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Sodium in PDB 4drt: Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89

Protein crystallography data

The structure of Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89, PDB code: 4drt was solved by A.Kuzin, M.Su, S.Rajagopalan, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosanti, D.Baker, J.K.Everett, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.54 / 2.00
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 50.114, 50.114, 134.205, 90.00, 90.00, 120.00
R / Rfree (%) 12.3 / 15.6

Other elements in 4drt:

The structure of Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89 (pdb code 4drt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89, PDB code: 4drt:

Sodium binding site 1 out of 1 in 4drt

Go back to Sodium Binding Sites List in 4drt
Sodium binding site 1 out of 1 in the Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Three Dimensional Structure of De Novo Designed Serine Hydrolase OSH26, Northeast Structural Genomics Consortium (Nesg) Target OR89 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:46.5
occ:1.00
O A:MSE59 2.5 26.5 1.0
O A:PHE64 3.2 26.2 1.0
C A:MSE59 3.5 26.8 1.0
CA A:GLY62 3.5 25.6 1.0
CA A:MSE59 3.9 26.0 1.0
N A:GLY62 4.0 26.2 1.0
C A:PHE64 4.2 27.0 1.0
CB A:MSE59 4.3 25.4 1.0
C A:GLY62 4.3 26.3 1.0
CE A:MSE59 4.6 35.3 1.0
O A:HOH639 4.6 30.7 1.0
CA A:LYS65 4.6 30.8 1.0
N A:LYS60 4.7 25.1 1.0
O A:HOH721 4.8 39.5 1.0
CB A:LYS65 4.8 33.0 1.0
O A:GLY62 4.9 25.3 1.0
N A:LYS65 4.9 29.3 1.0
N A:LYS63 4.9 27.1 1.0

Reference:

S.Rajagopalan, C.Wang, K.Yu, A.P.Kuzin, F.Richter, S.Lew, A.E.Miklos, M.L.Matthews, J.Seetharaman, M.Su, J.F.Hunt, B.F.Cravatt, D.Baker. Design of Activated Serine-Containing Catalytic Triads with Atomic-Level Accuracy. Nat.Chem.Biol. V. 10 386 2014.
ISSN: ISSN 1552-4450
PubMed: 24705591
DOI: 10.1038/NCHEMBIO.1498
Page generated: Tue Dec 15 06:37:09 2020

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