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Sodium in PDB 4dnl: Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution

Enzymatic activity of Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution

All present enzymatic activity of Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution:
2.7.11.13;

Protein crystallography data

The structure of Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution, PDB code: 4dnl was solved by Joint Center For Structural Genomics (Jcsg), Partnership For T-Cellbiology (Tcell), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.57 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 58.035, 58.035, 88.714, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 23

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution (pdb code 4dnl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution, PDB code: 4dnl:

Sodium binding site 1 out of 1 in 4dnl

Go back to Sodium Binding Sites List in 4dnl
Sodium binding site 1 out of 1 in the Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na300

b:56.7
occ:1.00
 OD1 A:ASP246 2.4 52.5 1.0
OD1 A:ASP248 2.4 55.1 1.0
O A:TRP247 2.4 44.1 1.0
OD2 A:ASP193 2.4 56.9 1.0
OD2 A:ASP187 2.6 92.0 1.0
OD1 A:ASP187 2.8 81.0 1.0
CG A:ASP187 3.1 83.7 1.0
CG A:ASP246 3.1 53.0 1.0
O A:HOH410 3.1 64.9 1.0
OD2 A:ASP246 3.3 62.6 1.0
C A:TRP247 3.4 44.9 1.0
CG A:ASP193 3.4 51.1 1.0
CG A:ASP248 3.6 54.6 1.0
CB A:ASP193 3.7 47.0 1.0
CA A:ASP248 3.8 48.6 1.0
N A:ASP193 3.8 45.6 1.0
N A:ASP248 4.0 44.7 1.0
N A:TRP247 4.2 41.9 1.0
CB A:ASP248 4.3 50.7 1.0
C A:ASP246 4.3 42.9 1.0
CA A:ASP193 4.4 44.3 1.0
CA A:TRP247 4.4 43.2 1.0
CB A:ASP246 4.4 49.8 1.0
C A:SER192 4.5 49.0 1.0
OD1 A:ASP193 4.5 48.9 1.0
OD2 A:ASP248 4.6 53.6 1.0
CB A:ASP187 4.6 83.6 1.0
CA A:SER192 4.6 54.2 1.0
O A:ASP246 4.7 42.9 1.0
CA A:ASP246 4.8 44.3 1.0
O A:HOH441 4.9 76.7 1.0
O A:ASP193 5.0 41.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology (Tcell). Crystal Structure of A C2 Domain of A Protein Kinase C Alpha (Prkca) From Homo Sapiens at 1.90 A Resolution To Be Published.
Page generated: Tue Dec 15 06:37:01 2020

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