Sodium in PDB 4dw8: Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I

The structure of Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I, PDB code: 4dw8 was solved by M.W.Vetting, S.R.Wasserman, L.L.Morisco, S.Sojitra, K.N.Allen, D.Dunaway-Mariano, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative(Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.28 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.669, 73.133, 82.572, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 21.1

The binding sites of Sodium atom in the Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I (pdb code 4dw8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I, PDB code: 4dw8:

Sodium binding site 1 out of 1 in the Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:25.3 occ:1.00 O A:ASP11 2.3 24.7 1.0 OD2 A:ASP219 2.4 24.0 1.0 OD2 A:ASP9 2.4 27.4 1.0 O A:HOH528 2.4 41.0 1.0 O A:HOH488 2.4 33.0 1.0 O A:HOH504 2.6 32.0 1.0 CG A:ASP9 3.3 20.9 1.0 CG A:ASP219 3.3 22.4 1.0 C A:ASP11 3.4 23.5 1.0 OD1 A:ASP219 3.5 25.3 1.0 OD2 A:ASP223 3.8 21.1 1.0 OD1 A:ASP9 3.9 22.4 1.0 CA A:ASP11 4.2 24.9 1.0 CB A:ASP9 4.3 17.9 1.0 CB A:ASP11 4.3 30.8 1.0 N A:ASP11 4.4 22.3 1.0 OG1 A:THR13 4.4 19.1 1.0 N A:GLY12 4.4 21.7 1.0 N A:GLY220 4.5 24.7 1.0 CA A:GLY12 4.5 20.2 1.0 CB A:ASP219 4.7 20.0 1.0 O A:HOH415 4.8 23.1 1.0 OD1 A:ASN222 4.8 33.9 1.0 CG A:ASP223 4.8 20.1 1.0 N A:ASP219 4.8 19.4 1.0 O A:HOH605 4.9 44.0 1.0 O A:HOH553 4.9 38.4 1.0 C A:GLY12 4.9 19.9 1.0 CA A:GLY220 5.0 24.7 1.0 C A:LEU10 5.0 21.1 1.0

M.W.Vetting, S.R.Wasserman, L.L.Morisco, S.Sojitra, K.N.Allen, D.Dunaway-Mariano, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Haloacid Dehalogenase-Like Hydrolase (Target Efi-900331) From Bacteroides Thetaiotaomicron with Bound Na Crystal Form I To Be Published.