Sodium in PDB 4dou: Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain

The structure of Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain, PDB code: 4dou was solved by X.Min, N.P.Walker, Z.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.00
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	48.310, 49.630, 50.460, 117.23, 101.68, 105.31
R / Rfree (%)	20 / 25.7

The structure of Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

The binding sites of Sodium atom in the Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain (pdb code 4dou). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain, PDB code: 4dou:

Sodium binding site 1 out of 1 in the Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1004 b:30.4 occ:1.00 O A:GLN478 2.4 23.1 1.0 O A:GLN196 2.4 20.9 1.0 O A:GLN337 2.4 21.8 1.0 O A:HOH1136 2.4 12.8 1.0 O A:HOH1113 2.5 17.1 1.0 O A:HOH1225 2.6 26.4 1.0 C A:GLN196 3.5 21.1 1.0 C A:GLN478 3.5 23.0 1.0 C A:GLN337 3.5 22.1 1.0 N A:GLN196 3.8 22.5 1.0 N A:GLN337 3.9 23.1 1.0 N A:GLN478 4.0 24.2 1.0 CA A:GLN196 4.0 21.8 1.0 CA A:GLN337 4.1 22.3 1.0 CA A:GLN478 4.1 23.3 1.0 CB A:GLN196 4.2 21.7 1.0 OD1 A:ASP187 4.2 23.7 1.0 OD2 A:ASP328 4.3 21.3 1.0 CB A:GLN337 4.3 22.3 1.0 CB A:GLN478 4.3 23.3 1.0 OD2 A:ASP469 4.3 24.1 1.0 O A:HOH1183 4.4 22.0 1.0 O A:HOH1231 4.4 24.4 1.0 O A:HOH1115 4.5 22.9 1.0 N A:ALA197 4.6 20.8 1.0 N A:ALA479 4.6 22.7 1.0 N A:ALA338 4.6 22.6 1.0 CA A:ALA479 4.9 23.0 1.0 CA A:ALA338 4.9 23.8 1.0 CA A:ALA197 5.0 20.6 1.0

X.Min, B.Lemon, J.Tang, Q.Liu, R.Zhang, N.Walker, Y.Li, Z.Wang. Crystal Structure of A Single-Chain Trimer of Human Adiponectin Globular Domain. Febs Lett. V. 586 912 2012.
ISSN: ISSN 0014-5793
PubMed: 22449980
DOI: 10.1016/J.FEBSLET.2012.02.024