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Sodium in PDB 4dih: X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
Enzymatic activity of X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
All present enzymatic activity of X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions:
3.4.21.5;
3.4.21.5;
Protein crystallography data
The structure of X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions, PDB code: 4dih
was solved by
I.Russo Krauss,
A.Merlino,
L.Mazzarella,
F.Sica,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 50.00 / 1.80 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 43.018, 44.716, 52.689, 65.22, 85.33, 69.97 |
| R / Rfree (%) | 16.7 / 21.3 |
Other elements in 4dih:
The structure of X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions also contains other interesting chemical elements:
| Zinc | (Zn) | 3 atoms |
| Chlorine | (Cl) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
(pdb code 4dih). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions, PDB code: 4dih:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions, PDB code: 4dih:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 4dih
Go back to
Sodium Binding Sites List in 4dih
Sodium binding site 1 out
of 3 in the X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions within 5.0Å range:
|
Sodium binding site 2 out of 3 in 4dih
Go back to
Sodium Binding Sites List in 4dih
Sodium binding site 2 out
of 3 in the X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions within 5.0Å range:
|
Sodium binding site 3 out of 3 in 4dih
Go back to
Sodium Binding Sites List in 4dih
Sodium binding site 3 out
of 3 in the X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of X-Ray Structure of the Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Sodium Ions within 5.0Å range:
|
Reference:
I.Russo Krauss,
A.Merlino,
A.Randazzo,
E.Novellino,
L.Mazzarella,
F.Sica.
High-Resolution Structures of Two Complexes Between Thrombin and Thrombin-Binding Aptamer Shed Light on the Role of Cations in the Aptamer Inhibitory Activity. Nucleic Acids Res. V. 40 8119 2012.
ISSN: ISSN 0305-1048
PubMed: 22669903
DOI: 10.1093/NAR/GKS512
Page generated: Tue Dec 15 06:36:51 2020
ISSN: ISSN 0305-1048
PubMed: 22669903
DOI: 10.1093/NAR/GKS512
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