Sodium in PDB 4djt: Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+

The structure of Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+, PDB code: 4djt was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.570, 89.250, 54.980, 90.00, 108.06, 90.00
R / Rfree (%)	17.5 / 21.6

The structure of Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+ also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+ (pdb code 4djt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+, PDB code: 4djt:

Sodium binding site 1 out of 1 in the Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Na303 b:26.8 occ:1.00 O B:HOH459 2.2 24.5 1.0 O B:HOH517 2.4 36.1 1.0 O B:LYS199 2.5 18.9 1.0 C B:LYS199 3.5 21.0 1.0 N B:LYS199 3.7 25.2 1.0 CA B:LYS199 4.1 23.0 1.0 CB B:LYS199 4.5 26.3 1.0 N B:TYR200 4.6 19.3 1.0 C B:SER198 4.6 27.1 1.0 CB B:TYR200 4.7 19.7 1.0 C B:TYR200 4.8 20.1 1.0 O B:TYR200 4.8 20.6 1.0 CA B:SER198 4.9 30.2 1.0 CA B:TYR200 5.0 20.1 1.0

T.E.Edwards, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound to Gdp-MG2+ To Be Published.