Sodium in PDB, part 81 (files: 3201-3240),
PDB 3sib-3t09
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 3201-3240 (PDB 3sib-3t09).
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3sib (Na: 1) - Crystal Structure of URE3-Binding Protein, Wild-Type
Other atoms:
Ca (2);
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3sis (Na: 2) - Crystal Structure of Porcine Crw-8 Rotavirus VP8* in Complex with Aceramido-GM3_GC
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3sit (Na: 2) - Crystal Structure of Porcine Crw-8 Rotavirus VP8* in Complex with Aceramido-GM3
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3sji (Na: 1) - Crystal Structure of CVA16 3C in Complex with Rupintrivir (AG7088)
Other atoms:
F (1);
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3sjl (Na: 4) - Crystal Structure of the P107S-Maug/Pre-Methylamine Dehydrogenase Complex
Other atoms:
Fe (4);
Ca (2);
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3sko (Na: 1) - Crystal Structure of A Peptide-Hla Structure
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3sla (Na: 2) - X-Ray Structure of First Four Repeats of Human Beta-Catenin
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3slz (Na: 1) - The Crystal Structure of the Complex of Xmrvpr with Tl-3
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3smb (Na: 3) - Phenethylisothiocyanate Covalently Bound to Macrophage Migration Inhibitory Factor (Mif)
Other atoms:
Cl (9);
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3smc (Na: 4) - Macrophage Migration Inhibitory Factor (Mif) with Covalently Bound L- Sulforaphane
Other atoms:
Cl (7);
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3sn4 (Na: 1) - Crystal Structure of Putative L-Alanine-Dl-Glutamate Epimerase From Burkholderia Xenovorans Strain LB400 Bound to Magnesium and Alpha- Ketoglutarate
Other atoms:
Mg (1);
Cl (1);
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3so7 (Na: 2) - Organophoshatedegrading Enzyme (Opda)-Phosphate Complex
Other atoms:
Co (2);
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3sp3 (Na: 4) - Lysozyme in 20% Sucrose
Other atoms:
Cl (4);
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3spv (Na: 1) - Crystal Structure of A Peptide-Hla Complex
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3spx (Na: 1) - Crystal Structure of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani
Other atoms:
Cl (1);
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3ssb (Na: 2) - Structure of Insect Metalloproteinase Inhibitor in Complex with Thermolysin
Other atoms:
Ca (6);
Zn (2);
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3st1 (Na: 1) - Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease
Other atoms:
Zn (1);
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3stc (Na: 1) - Crystal Structure of Loop 7 Truncated Mutant of 3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis
Other atoms:
Cl (7);
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3ste (Na: 1) - Crystal Structure of A Mutant (Q202A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis
Other atoms:
Cl (1);
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3stf (Na: 1) - Crystal Structure of A Mutant (S211A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis
Other atoms:
Cl (1);
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3sth (Na: 4) - Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii
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3suh (Na: 2) - Crystal Structure of Thf Riboswitch, Bound with 5-Formyl-Thf
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3suj (Na: 1) - Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1)
Other atoms:
Cl (1);
Zn (3);
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3sux (Na: 1) - Crystal Structure of Thf Riboswitch, Bound with Thf
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3sv2 (Na: 2) - Human Thrombin in Complex with UBTHR105
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3svi (Na: 1) - Structure of the Pto-Binding Domain of Hoppmal Generated By Limited Thermolysin Digestion
Other atoms:
Cl (4);
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3svt (Na: 1) - Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans
Other atoms:
Cl (1);
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3svw (Na: 4) - Crystal Structure of the P107V-Maug/Pre-Methylamine Dehydrogenase Complex
Other atoms:
Fe (4);
Ca (2);
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3sw2 (Na: 1) - X-Ray Crystal Structure of Human Fxa in Complex with 6-Chloro-N-((3S)- 2-Oxo-1-(2-Oxo-2-((5S)-8-Oxo-5,6-Dihydro-1H-1,5-Methanopyrido[1,2- A][1,5]Diazocin-3(2H,4H,8H)-Yl)Ethyl)Piperidin-3-Yl)Naphthalene-2- Sulfonamide
Other atoms:
Cl (1);
Ca (1);
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3sws (Na: 4) - Crystal Structure of the Quinone Form of Methylamine Dehydrogenase in Complex with the Diferric Form of Maug
Other atoms:
Fe (4);
Ca (2);
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3sxq (Na: 2) - Structure of A Hexameric Multiheme C Nitrite Reductase From the Extremophile Bacterium Thiolkalivibrio Paradoxus
Other atoms:
Co (4);
Fe (16);
Cl (2);
Ca (2);
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3sxt (Na: 4) - Crystal Structure of the Quinol Form of Methylamine Dehydrogenase in Complex with the Diferrous Form of Maug
Other atoms:
Fe (4);
Ca (2);
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3sya (Na: 1) - Crystal Structure of the G Protein-Gated Inward Rectifier K+ Channel GIRK2 (KIR3.2) in Complex with Sodium and PIP2
Other atoms:
K (5);
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3syo (Na: 1) - Crystal Structure of the G Protein-Gated Inward Rectifier K+ Channel GIRK2 (KIR3.2) in Complex with Sodium
Other atoms:
K (6);
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3syu (Na: 2) - Re-Refined Coordinates For Pdb Entry 1DET - Ribonuclease T1 Carboxymethylated at Glu 58 in Complex with 2'Gmp
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3sz9 (Na: 8) - Crystal Structure of Human ALDH2 Modified with the Beta-Elimination Product of Aldi-3; 1-(4-Ethylbenzene)Prop-2-En-1-One
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3szs (Na: 19) - Crystal Structure Analysis of Hellethionin D
Other atoms:
Cl (33);
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3szt (Na: 1) - Quorum Sensing Control Repressor, Qscr, Bound to N-3-Oxo-Dodecanoyl-L- Homoserine Lactone
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3t08 (Na: 13) - E. Coli (Lacz) Beta-Galactosidase (S796A) Iptg Complex
Other atoms:
Mg (9);
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3t09 (Na: 16) - E. Coli (Lacz) Beta-Galactosidase (S796A) Galactonolactone Complex
Other atoms:
Mg (11);
Page generated: Sun Dec 15 11:35:51 2024
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