Sodium in PDB 3st1: Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease

The structure of Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease, PDB code: 3st1 was solved by J.F.Oliveira, G.Zaparoli, M.R.O.Barsottini, A.L.B.Ambrosio, G.A.G.Pereira, S.M.G.Dias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.52 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	89.480, 44.210, 60.170, 90.00, 110.04, 90.00
R / Rfree (%)	13.9 / 19.6

The structure of Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease (pdb code 3st1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease, PDB code: 3st1:

Sodium binding site 1 out of 1 in the Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Necrosis and Ethylene Inducing Protein 2 From the Causal Agent of Cocoa'S Witches Broom Disease within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2 b:14.8 occ:1.00 O A:HOH335 2.0 5.2 1.0 OD2 A:ASP157 2.0 20.5 1.0 OD1 A:ASP157 2.4 20.2 1.0 CG A:ASP157 2.4 18.0 1.0 O A:HOH243 2.6 34.0 1.0 O A:HOH336 3.2 16.6 1.0 CB A:ASP157 3.9 16.6 1.0 O A:HOH452 4.5 28.0 1.0 O A:HOH403 4.5 16.7 1.0 CA A:ASP157 4.8 15.8 1.0

G.Zaparoli, M.R.Barsottini, J.F.De Oliveira, F.Dyszy, P.J.Teixeira, J.G.Barau, O.Garcia, A.J.Costa-Filho, A.L.Ambrosio, G.A.Pereira, S.M.Dias. The Crystal Structure of Necrosis- and Ethylene-Inducing Protein 2 From the Causal Agent of Cacao'S Witches' Broom Disease Reveals Key Elements For Its Activity. Biochemistry V. 50 9901 2011.
ISSN: ISSN 0006-2960
PubMed: 21999603
DOI: 10.1021/BI201253B