Sodium in PDB 3slz: The Crystal Structure of Xmrv Protease Complexed with Tl-3

The structure of The Crystal Structure of Xmrv Protease Complexed with Tl-3, PDB code: 3slz was solved by M.Li, A.Gustchina, A.Wlodawer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.78 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.483, 65.546, 69.732, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 20.1

The binding sites of Sodium atom in the The Crystal Structure of Xmrv Protease Complexed with Tl-3 (pdb code 3slz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of Xmrv Protease Complexed with Tl-3, PDB code: 3slz:

Sodium binding site 1 out of 1 in the The Crystal Structure of Xmrv Protease Complexed with Tl-3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Xmrv Protease Complexed with Tl-3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na130 b:45.2 occ:1.00 O B:HOH179 2.1 36.1 1.0 O B:PHE107 2.2 29.1 1.0 O B:GLY109 2.3 38.7 1.0 O B:HOH157 2.3 43.7 1.0 O B:GLY111 2.6 25.9 1.0 C B:PHE107 3.2 18.1 1.0 O1 B:FMT127 3.2 49.6 1.0 C B:GLY109 3.4 40.5 1.0 N B:GLY111 3.5 36.0 1.0 C B:GLY111 3.6 26.2 1.0 C B:FMT127 3.7 52.1 1.0 CA B:PHE107 3.9 15.6 1.0 CA B:GLY111 3.9 33.9 1.0 N B:GLY109 4.0 33.8 1.0 C B:SER110 4.1 39.3 1.0 O B:HOH178 4.1 30.7 1.0 N B:GLU108 4.1 22.2 1.0 C B:GLU108 4.3 36.4 1.0 O B:HOH220 4.3 62.3 1.0 N B:SER110 4.3 41.0 1.0 CA B:SER110 4.3 42.6 1.0 O2 B:FMT127 4.3 52.8 1.0 CA B:GLY109 4.4 40.4 1.0 CD A:LYS102 4.5 36.0 1.0 CA B:GLU108 4.5 28.8 1.0 CB B:PHE107 4.5 15.3 1.0 CE A:LYS102 4.8 39.1 1.0 N B:ALA112 4.8 18.0 1.0 O B:GLU108 4.9 35.6 1.0 O B:SER110 4.9 38.9 1.0 CG2 A:THR99 4.9 15.1 0.5

M.Li, A.Gustchina, K.Matuz, J.Tozser, S.Namwong, N.E.Goldfarb, B.M.Dunn, A.Wlodawer. Structural and Biochemical Characterization of the Inhibitor Complexes of Xenotropic Murine Leukemia Virus-Related Virus Protease. Febs J. V. 278 4413 2011.
ISSN: ISSN 1742-464X
PubMed: 21951660
DOI: 10.1111/J.1742-4658.2011.08364.X