Sodium in PDB 3sib: Crystal Structure of URE3-Binding Protein, Wild-Type

The structure of Crystal Structure of URE3-Binding Protein, Wild-Type, PDB code: 3sib was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.16 / 1.90
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	99.699, 99.699, 107.034, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / 19

The structure of Crystal Structure of URE3-Binding Protein, Wild-Type also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of URE3-Binding Protein, Wild-Type (pdb code 3sib). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of URE3-Binding Protein, Wild-Type, PDB code: 3sib:

Sodium binding site 1 out of 1 in the Crystal Structure of URE3-Binding Protein, Wild-Type


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of URE3-Binding Protein, Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ A:Na223 b:17.3 occ:1.00 O A:THR133 2.2 14.8 1.0 OD1 A:ASP127 2.3 14.7 1.0 OD1 A:ASN129 2.4 17.5 1.0 O A:HOH248 2.5 14.2 1.0 OG A:SER131 2.5 15.9 1.0 O A:HOH280 2.5 11.4 1.0 CG A:ASP127 3.4 16.9 1.0 C A:THR133 3.5 15.4 1.0 CG A:ASN129 3.5 22.6 1.0 CB A:SER131 3.6 16.0 1.0 N A:SER131 3.9 15.7 1.0 CA A:ASP127 3.9 15.2 1.0 ND2 A:ASN129 4.0 21.2 1.0 CB A:ASP127 4.1 15.4 1.0 O A:HOH301 4.1 24.1 1.0 N A:THR133 4.2 14.1 1.0 O A:HOH295 4.2 25.6 1.0 OD2 A:ASP127 4.2 15.2 1.0 CA A:SER131 4.3 15.7 1.0 C A:ASP127 4.4 16.7 1.0 N A:LEU134 4.4 15.9 1.0 OG1 A:THR133 4.4 18.9 1.0 CA A:THR133 4.4 14.5 1.0 CA A:LEU134 4.4 15.7 1.0 OE2 A:GLU138 4.4 17.9 1.0 O A:HOH351 4.5 31.7 1.0 N A:ASN129 4.6 19.7 1.0 N A:ARG128 4.6 18.0 1.0 N A:ARG130 4.7 16.8 1.0 N A:GLY132 4.8 15.4 1.0 CD2 A:LEU134 4.8 15.1 1.0 CB A:ASN129 4.8 20.8 1.0 C A:SER131 4.8 15.6 1.0 C A:ASN129 4.9 19.0 1.0 O A:ASP127 5.0 14.5 1.0 CA A:ASN129 5.0 19.7 1.0

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), A.Gardberg, T.Edwards, B.Staker, P.Skubak, C.Gilchrist, L.Stewart. Crystal Structure of URE3-Binding Protein To Be Published.