Sodium in PDB 3spv: Crystal Structure of A Peptide-Hla Complex

The structure of Crystal Structure of A Peptide-Hla Complex, PDB code: 3spv was solved by S.Gras, J.Rossjohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.58 / 1.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.560, 81.460, 110.020, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 21.9

The binding sites of Sodium atom in the Crystal Structure of A Peptide-Hla Complex (pdb code 3spv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Peptide-Hla Complex, PDB code: 3spv:

Sodium binding site 1 out of 1 in the Crystal Structure of A Peptide-Hla Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Peptide-Hla Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na279 b:17.4 occ:1.00 OD2 A:ASP74 2.9 13.2 1.0 O A:LEU95 2.9 6.5 1.0 O A:HOH346 2.9 28.8 1.0 OG A:SER97 3.0 7.0 0.2 NZ C:LYS5 3.2 8.1 0.5 NZ C:LYS5 3.3 5.9 0.5 O A:ASP9 3.5 5.1 1.0 C A:LEU95 3.6 5.4 1.0 CB A:ASP9 3.6 6.2 1.0 N A:SER97 3.7 5.3 0.2 N A:SER97 3.7 5.3 0.8 OG A:SER97 3.7 7.0 0.8 CA A:GLN96 3.7 4.3 1.0 C A:ASP9 3.7 5.5 1.0 CG A:ASP74 3.8 13.6 1.0 C A:GLN96 3.8 5.3 1.0 N A:ALA11 3.9 5.4 1.0 CG A:LEU95 3.9 7.5 1.0 N A:GLN96 4.0 4.6 1.0 CB A:SER97 4.1 7.4 0.2 CB A:ALA11 4.1 7.5 1.0 N A:THR10 4.1 5.4 1.0 CB A:SER97 4.2 7.1 0.8 OD1 A:ASP74 4.2 12.2 1.0 CD2 A:LEU95 4.2 9.0 1.0 C A:THR10 4.3 4.8 1.0 CA A:THR10 4.3 5.6 1.0 CB A:LEU95 4.3 6.4 1.0 CA A:ASP9 4.4 4.7 1.0 CA A:SER97 4.5 5.4 0.2 O A:GLN96 4.5 5.6 1.0 CE C:LYS5 4.5 7.9 0.5 CA A:SER97 4.6 5.3 0.8 CA A:LEU95 4.6 6.1 1.0 CA A:ALA11 4.6 6.7 1.0 CE C:LYS5 4.7 6.8 0.5 CB A:ASP74 4.8 8.6 1.0 CG A:ASP9 4.9 5.4 1.0 CE1 A:PHE22 4.9 8.7 1.0 CE1 A:TYR116 4.9 7.5 0.5 OD2 A:ASP9 5.0 7.8 1.0

S.Gras, J.Rossjohn. Crystal Structure of A Peptide-Hla Complex To Be Published.