Sodium in PDB 3sko: Crystal Structure of the Hla-B8-A66-Flr, Mutant A66 of the Hla B8

The structure of Crystal Structure of the Hla-B8-A66-Flr, Mutant A66 of the Hla B8, PDB code: 3sko was solved by S.Gras, P.G.Wilmann, C.Zhenjun, H.Hanim, L.Yu Chih, L.Kjer-Nielsen, A.W.Purcell, S.R.Burrows, J.Mccluskey, J.Rossjohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.71 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.900, 81.850, 110.720, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 23.4

The binding sites of Sodium atom in the Crystal Structure of the Hla-B8-A66-Flr, Mutant A66 of the Hla B8 (pdb code 3sko). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Hla-B8-A66-Flr, Mutant A66 of the Hla B8, PDB code: 3sko:

Sodium binding site 1 out of 1 in the Crystal Structure of the Hla-B8-A66-Flr, Mutant A66 of the Hla B8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Hla-B8-A66-Flr, Mutant A66 of the Hla B8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na278 b:25.4 occ:1.00 N A:ALA135 3.0 13.0 1.0 O A:HOH429 3.0 31.9 1.0 OE1 A:GLN144 3.1 22.3 1.0 O A:HOH483 3.4 34.4 1.0 O A:TRP133 3.7 14.0 1.0 O A:HOH380 3.7 40.4 1.0 CA A:THR134 3.7 9.1 1.0 C A:THR134 3.8 11.9 1.0 CB A:ALA135 3.8 14.5 1.0 CA A:ALA135 3.8 12.2 1.0 O A:ALA135 3.9 14.6 1.0 CD A:GLN144 3.9 17.5 1.0 NE2 A:GLN144 4.0 21.7 1.0 C A:ALA135 4.3 10.9 1.0 C A:TRP133 4.4 14.1 1.0 N A:THR134 4.5 11.4 1.0 O A:HOH426 4.6 28.4 1.0 O A:HOH424 4.6 27.8 1.0 CG2 A:THR134 4.7 18.6 1.0 CB A:THR134 4.7 14.7 1.0

S.Gras, P.G.Wilmann, Z.Chen, H.Halim, Y.C.Liu, L.Kjer-Nielsen, A.W.Purcell, S.R.Burrows, J.Mccluskey, J.Rossjohn. A Structural Basis For Varied Alpha-Beta Tcr Usage Against An Immunodominant Ebv Antigen Restricted to A Hla-B8 Molecule. J.Immunol. V. 188 311 2012.
ISSN: ISSN 0022-1767
PubMed: 22140258
DOI: 10.4049/JIMMUNOL.1102686