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Sodium in PDB 3suj: Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1)

Protein crystallography data

The structure of Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1), PDB code: 3suj was solved by J.F.Oliveira, M.R.O.Barsottini, G.Zaparoli, L.O.Machado, S.M.G.Dias, G.A.G.Pereira, A.L.B.Ambrosio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.51 / 1.34
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 45.280, 45.280, 105.470, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22

Other elements in 3suj:

The structure of Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1) (pdb code 3suj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1), PDB code: 3suj:

Sodium binding site 1 out of 1 in 3suj

Go back to Sodium Binding Sites List in 3suj
Sodium binding site 1 out of 1 in the Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cerato-Platanin 1 From M. Perniciosa (MPCP1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na207

b:16.3
occ:1.00
O A:HOH427 1.9 38.9 1.0
OE1 A:GLU124 2.0 25.8 1.0
O A:HOH428 2.0 33.6 1.0
O A:HOH429 2.3 25.8 1.0
OE2 A:GLU124 2.7 27.8 1.0
CD A:GLU124 2.7 21.2 1.0
O A:HOH396 4.0 25.8 1.0
CG A:GLU124 4.3 18.5 1.0
O A:HOH408 4.4 28.1 1.0
CB A:GLU124 4.9 13.2 1.0
O A:HOH431 4.9 32.5 1.0

Reference:

M.R.De O Barsottini, J.F.De Oliveira, D.Adamoski, P.J.Teixeira, P.F.Do Prado, H.O.Tiezzi, M.L.Sforca, A.Cassago, R.V.Portugal, P.S.De Oliveira, A.C.De M Zeri, S.M.Dias, G.A.Pereira, A.L.Ambrosio. Functional Diversification of Cerato-Platanins in Moniliophthora Perniciosa As Seen By Differential Expression and Protein Function Specialization. Mol. Plant Microbe Interact. V. 26 1281 2013.
ISSN: ISSN 0894-0282
PubMed: 23902259
DOI: 10.1094/MPMI-05-13-0148-R
Page generated: Tue Dec 15 06:25:04 2020

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