Sodium in PDB 3svt: Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans

The structure of Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans, PDB code: 3svt was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.62 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	61.185, 64.542, 118.804, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 21.9

The structure of Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans (pdb code 3svt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans, PDB code: 3svt:

Sodium binding site 1 out of 1 in the Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans within 5.0Å range: probe atom residue distance (Å) B Occ A:Na278 b:32.6 occ:1.00 O A:GLN6 2.3 38.3 1.0 O A:GLY31 2.3 30.7 1.0 O A:HOH378 2.7 32.5 1.0 O A:HOH371 3.4 19.1 1.0 C A:GLN6 3.5 37.3 1.0 O A:GLY58 3.6 41.7 1.0 C A:GLY31 3.6 30.3 1.0 NE2 A:GLN6 3.9 49.8 1.0 C A:GLY58 4.2 42.2 1.0 CA A:GLN6 4.3 38.7 1.0 CA A:GLY31 4.4 30.8 1.0 O A:HOH341 4.4 18.7 1.0 N A:ASP7 4.4 35.9 1.0 CA A:ASP7 4.5 35.5 1.0 OD1 A:ASP7 4.5 40.5 1.0 N A:ALA32 4.5 28.8 1.0 CA A:ALA32 4.6 27.9 1.0 O A:ASN57 4.6 47.5 1.0 CG A:GLN6 4.6 45.9 1.0 C A:ALA32 4.7 27.4 1.0 CD A:GLN6 4.7 50.1 1.0 N A:GLY59 4.9 40.3 1.0 N A:SER33 4.9 26.8 1.0 CA A:GLY58 4.9 45.0 1.0 OG A:SER33 4.9 28.9 1.0

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003