Atomistry » Sodium » PDB 3sib-3t09 » 3svt
Atomistry »
  Sodium »
    PDB 3sib-3t09 »
      3svt »

Sodium in PDB 3svt: Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans

Protein crystallography data

The structure of Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans, PDB code: 3svt was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.62 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 61.185, 64.542, 118.804, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 21.9

Other elements in 3svt:

The structure of Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans (pdb code 3svt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans, PDB code: 3svt:

Sodium binding site 1 out of 1 in 3svt

Go back to Sodium Binding Sites List in 3svt
Sodium binding site 1 out of 1 in the Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Short-Chain Type Dehydrogenase/Reductase From Mycobacterium Ulcerans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na278

b:32.6
occ:1.00
O A:GLN6 2.3 38.3 1.0
O A:GLY31 2.3 30.7 1.0
O A:HOH378 2.7 32.5 1.0
O A:HOH371 3.4 19.1 1.0
C A:GLN6 3.5 37.3 1.0
O A:GLY58 3.6 41.7 1.0
C A:GLY31 3.6 30.3 1.0
NE2 A:GLN6 3.9 49.8 1.0
C A:GLY58 4.2 42.2 1.0
CA A:GLN6 4.3 38.7 1.0
CA A:GLY31 4.4 30.8 1.0
O A:HOH341 4.4 18.7 1.0
N A:ASP7 4.4 35.9 1.0
CA A:ASP7 4.5 35.5 1.0
OD1 A:ASP7 4.5 40.5 1.0
N A:ALA32 4.5 28.8 1.0
CA A:ALA32 4.6 27.9 1.0
O A:ASN57 4.6 47.5 1.0
CG A:GLN6 4.6 45.9 1.0
C A:ALA32 4.7 27.4 1.0
CD A:GLN6 4.7 50.1 1.0
N A:GLY59 4.9 40.3 1.0
N A:SER33 4.9 26.8 1.0
CA A:GLY58 4.9 45.0 1.0
OG A:SER33 4.9 28.9 1.0

Reference:

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003
Page generated: Tue Dec 15 06:25:08 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy