Atomistry » Sodium » PDB 3k9g-3la1
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Sodium in PDB, part 68 (files: 2681-2720), PDB 3k9g-3la1

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 2681-2720 (PDB 3k9g-3la1).
  1. 3k9g (Na: 1) - Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak
    Other atoms: I (12);
  2. 3k9x (Na: 2) - X-Ray Crystal Structure of Human Fxa in Complex with (S)-N- ((2-Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2- (Pyrrolidin-1-Yl)Ethyl)Azepan-3- Ylamino)Methylene) Nicotinamide
    Other atoms: Ca (2);
  3. 3kam (Na: 2) - Hen Egg White Lysozyme Derivatized with Rhenium(I) Diaquatricarbonyl Cation
    Other atoms: Re (1); Cl (1);
  4. 3kbc (Na: 6) - Crystal Structure of Gltph K55C-A364C Mutant Crosslinked with Divalent Mercury
    Other atoms: Hg (3);
  5. 3kbk (Na: 1) - Epi-Isozizaene Synthase Complexed with Hg
    Other atoms: Hg (6); Cl (3);
  6. 3ked (Na: 2) - Crystal Structure of Aminopeptidase N in Complex with 2,4- Diaminobutyric Acid
    Other atoms: Zn (1);
  7. 3ker (Na: 4) - D-Dopachrome Tautomerase (D-Dt)/ Macrophage Migration Inhibitory Factor 2 (MIF2) Complexed with Inhibitor 4-Ipp
    Other atoms: Cl (12);
  8. 3keu (Na: 2) - Crystal Structure of Human Pl Kinase with Bound Plp and Atp
    Other atoms: Mg (4);
  9. 3kgd (Na: 5) - Crystal Structure of E. Coli Rna 3' Cyclase
  10. 3kgq (Na: 1) - Carboxypeptidase A Liganded to An Organic Small-Molecule: Conformational Changes
    Other atoms: Zn (1);
  11. 3kii (Na: 2) - Agao 5-Phenoxy-2,3-Pentadienylamine Complex
    Other atoms: Cu (2);
  12. 3kl0 (Na: 4) - Crystal Structure of the Glucuronoxylan Xylanohydrolase Xync From Bacillus Subtilis
  13. 3klb (Na: 1) - Crystal Structure of Putative Flavoprotein in Complex with Fmn (YP_213683.1) From Bacteroides Fragilis Nctc 9343 at 1.75 A Resolution
  14. 3kn4 (Na: 1) - Agao 6-Phenyl-2,3-Hexadienylamine Complex
    Other atoms: Cu (1);
  15. 3knt (Na: 4) - Crystal Structure of Methanocaldococcus Jannaschii 8- Oxoguanine Glycosylase/Lyase in Complex with 15MER Dna Containing 8-Oxoguanine
  16. 3kqb (Na: 2) - Factor Xa in Complex with the Inhibitor N-(3-Fluoro-2'- (Methylsulfonyl)Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1H- 1,2,4- Triazol-3-Yl)Phenyl)-3-(Trifluoromethyl)-1H- Pyrazole-5-Carboxamide
    Other atoms: F (4);
  17. 3kqc (Na: 2) - Factor Xa in Complex with the Inhibitor 6-(2'- (Methylsulfonyl) Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1H- 1,2,4-Triazol-3-Yl) Phenyl)-3-(Trifluoromethyl)-5,6- Dihydro-1H-Pyrazolo[3,4-C]Pyridin- 7(4H)-One
    Other atoms: F (3);
  18. 3kqd (Na: 2) - Factor Xa in Complex with the Inhibitor 1-(3-(5-Oxo-4,5- Dihydro-1H-1, 2,4-Triazol-3-Yl)Phenyl)-6-(2'-(Pyrrolidin-1- Ylmethyl)Biphenyl-4- Yl)-3-(Trifluoromethyl)-5,6-Dihydro- 1H-Pyrazolo[3,4-C]Pyridin-7(4H)- One
    Other atoms: F (3);
  19. 3kqe (Na: 2) - Factor Xa in Complex with the Inhibitor 3-Methyl-1-(3-(5- Oxo-4,5- Dihydro-1H-1,2,4-Triazol-3-Yl)Phenyl)-6-(2'- (Pyrrolidin-1-Ylmethyl) Biphenyl-4-Yl)-5,6-Dihydro-1H- Pyrazolo[3,4-C]Pyridin-7(4H)-One
  20. 3krs (Na: 2) - Structure of Triosephosphate Isomerase From Cryptosporidium Parvum at 1.55A Resolution
  21. 3kw8 (Na: 2) - Two-Domain Laccase From Streptomyces Coelicolor at 2.3 A Resolution
    Other atoms: Fe (1); Cu (4);
  22. 3kwm (Na: 2) - Crystal Structure of Ribose-5-Isomerase A
  23. 3kyj (Na: 1) - Crystal Structure of the P1 Domain of CHEA3 in Complex with CHEY6 From R. Sphaeroides
  24. 3kzw (Na: 19) - Crystal Structure of Cytosol Aminopeptidase From Staphylococcus Aureus Col
    Other atoms: Cl (67);
  25. 3l0o (Na: 2) - Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima
    Other atoms: U (7);
  26. 3l1o (Na: 2) - Crystal Structure of Monoclonal Antibody MN423 Fab Fragment with Free Combining Site, Crystallized in the Presence of Zinc
    Other atoms: Zn (1);
  27. 3l25 (Na: 8) - Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna
    Other atoms: Mg (1); Cl (4);
  28. 3l27 (Na: 1) - Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant
    Other atoms: K (2); Cl (6);
  29. 3l28 (Na: 5) - Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain K339A Mutant
    Other atoms: Cl (12);
  30. 3l6i (Na: 2) - Crystal Structure of the Uncharacterized Lipoprotein Yceb From E. Coli at the Resolution 2.0A. Northeast Structural Genomics Consortium Target ER542
  31. 3l6t (Na: 1) - Crystal Structure of An N-Terminal Mutant of the Plasmid PCU1 Trai Relaxase Domain
    Other atoms: Ni (2); Mg (1); Cl (3);
  32. 3l7x (Na: 2) - The Crystal Structure of Smu.412C From Streptococcus Mutans UA159
    Other atoms: Zn (1);
  33. 3l88 (Na: 11) - Crystal Structure of the Human Adenovirus Type 21 Fiber Knob
    Other atoms: Cl (2);
  34. 3l8g (Na: 1) - Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with D-Glycero-D-Manno- Heptose 1 ,7-Bisphosphate
    Other atoms: Mg (1); Zn (1);
  35. 3l8l (Na: 4) - Gramicidin D Complex with Sodium Iodide
    Other atoms: I (7);
  36. 3l8m (Na: 3) - Crystal Structure of A Probable Thiamine Pyrophosphokinase From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Consortium Target Id SYR86
  37. 3l8w (Na: 1) - Urate Oxidase From Aspergillus Flavus Complexed with Xanthin
  38. 3l9a (Na: 1) - Structure of the C-Terminal Domain From A Streptococcus Mutans Hypothetical
  39. 3l9g (Na: 1) - Urate Oxidase Complexed with Uric Acid and Chloride
    Other atoms: Cl (1);
  40. 3la1 (Na: 2) - High Resolution Crystal Structure of Cypet Mutant A167I
Page generated: Tue Dec 1 10:35:59 2020

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