Sodium in PDB 3l0o: Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima

The structure of Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima, PDB code: 3l0o was solved by A.Canals, I.Uson, M.Coll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.55 / 2.35
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	139.000, 139.000, 150.000, 90.00, 90.00, 90.00
R / Rfree (%)	26.8 / 29.7

The structure of Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima also contains other interesting chemical elements:

Uranium

(U)

7 atoms

The binding sites of Sodium atom in the Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima (pdb code 3l0o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima, PDB code: 3l0o:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Na436 b:49.2 occ:1.00 O2 B:SO4432 2.1 0.8 1.0 N B:LYS185 2.7 35.9 1.0 CA B:LYS185 3.3 38.0 1.0 O B:HOH451 3.5 72.2 1.0 S B:SO4432 3.5 0.8 1.0 C B:PRO184 3.8 34.1 1.0 CG B:LYS185 4.0 41.6 1.0 NH2 A:ARG370 4.0 50.9 1.0 CA B:PRO184 4.1 33.0 1.0 O3 B:SO4432 4.1 0.6 1.0 O1 B:SO4432 4.2 0.8 1.0 CB B:LYS185 4.3 38.6 1.0 O4 B:SO4432 4.4 84.1 1.0 O A:HOH499 4.5 73.9 1.0 C B:LYS185 4.6 37.7 1.0 N B:ALA186 4.7 38.0 1.0 CE B:LYS188 4.8 36.3 1.0 O B:PRO184 4.9 33.6 1.0 CB B:PRO184 4.9 32.6 1.0 O B:PRO183 4.9 31.7 1.0

Sodium binding site 2 out of 2 in the Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Na437 b:66.9 occ:1.00 OE2 B:GLU333 2.9 75.4 1.0 O B:GLY328 3.2 65.3 1.0 C B:GLY328 3.7 65.0 1.0 CD B:GLU333 3.9 74.4 1.0 CA B:GLY328 4.1 64.1 1.0 OE1 B:GLU333 4.2 76.6 1.0 N B:SER329 4.5 65.8 1.0 N B:LYS330 4.6 68.3 1.0 CE B:LYS330 4.7 76.1 1.0 C B:SER329 4.7 67.4 1.0 CG B:LYS330 4.9 71.3 1.0 CA B:SER329 5.0 66.6 1.0

A.Canals, I.Uson, M.Coll. The Structure of Rna-Free Rho Termination Factor Indicates A Dynamic Mechanism of Transcript Capture J.Mol.Biol. V. 400 16 2010.
ISSN: ISSN 0022-2836
PubMed: 20452362
DOI: 10.1016/J.JMB.2010.05.004