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Sodium in the structure of Agao 6-Phenyl-2,3-Hexadienylamine Complex (pdb 3kn4)

The binding sites of Sodium atom in the structure of Agao 6-Phenyl-2,3-Hexadienylamine Complex (pdb code 3kn4). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 3kn4 structure was solved by Y.H.NGUYEN, K.E.ERNBERG, J.M.GUSS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)15.0-2.0
Space groupC121
a (A)157.888
b (A)63.335
c (A)92.213
alpha (°)90.00
beta (°)112.09
gamma (°)90.00
Rfactor (%)17.6
Rfree (%)22.1

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 3kn4

Sodium binding site 1 out of 1 in 3kn4
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 3kn4
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3kn4. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg49, A: Asp440, A: Met441, A: Ala442, A: Phe446, A: Tyr546, A: Asp581, A: Ile582, A: Val583, A: Hoh760,

conact list:

AtomAtomDistance (A)
NaNH2 A:Arg494.06
NaO A:Asp4404.51
NaCB A:Asp4404.48
NaOD2 A:Asp4404.40
NaC A:Asp4403.80
NaOD1 A:Asp4402.32
NaCG A:Asp4403.57
NaCA A:Asp4404.19
NaO A:Met4412.37
NaN A:Met4413.30
NaCB A:Met4414.31
NaC A:Met4413.40
NaCA A:Met4413.82
NaN A:Ala4424.60
NaCD1 A:Phe4464.06
NaCE1 A:Phe4464.53
NaCB A:Tyr5464.99
NaO A:Asp5814.74
NaCB A:Asp5814.48
NaOD2 A:Asp5814.52
NaC A:Asp5813.86
NaOD1 A:Asp5812.40
NaCG A:Asp5813.64
NaCA A:Asp5814.11
NaO A:Ile5822.37
NaN A:Ile5823.24
NaC A:Ile5823.37
NaCG1 A:Ile5824.84
NaCA A:Ile5823.88
NaN A:Val5834.52
NaCG2 A:Val5834.74
NaCA A:Val5834.98
NaO A:Hoh7602.78

interactive model:

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