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Sodium in PDB 3la1: High Resolution Crystal Structure of Cypet Mutant A167I

Protein crystallography data

The structure of High Resolution Crystal Structure of Cypet Mutant A167I, PDB code: 3la1 was solved by X.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.87 / 1.29
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.777, 63.129, 69.746, 90.00, 90.00, 90.00
R / Rfree (%) 12.7 / 15.9

Sodium Binding Sites:

The binding sites of Sodium atom in the High Resolution Crystal Structure of Cypet Mutant A167I (pdb code 3la1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the High Resolution Crystal Structure of Cypet Mutant A167I, PDB code: 3la1:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3la1

Go back to Sodium Binding Sites List in 3la1
Sodium binding site 1 out of 2 in the High Resolution Crystal Structure of Cypet Mutant A167I


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Resolution Crystal Structure of Cypet Mutant A167I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:30.7
occ:1.00
O A:HOH657 2.3 23.0 1.0
O A:HOH658 2.7 27.2 1.0
O A:HOH498 2.7 25.9 1.0
N A:ASN149 3.1 8.3 1.0
O A:HOH424 3.3 11.4 1.0
CA A:HIS148 3.7 7.3 1.0
CB A:HIS148 3.7 8.3 1.0
ND1 A:HIS148 3.8 9.6 1.0
C A:HIS148 3.9 7.8 1.0
CB A:ASN149 3.9 9.1 1.0
CA A:ASN149 4.0 8.2 1.0
O A:ASN149 4.2 8.9 1.0
CG A:HIS148 4.2 7.1 1.0
CG A:ASN149 4.2 9.4 1.0
ND2 A:ASN149 4.3 14.6 1.0
OH A:TYR151 4.6 14.5 1.0
C A:ASN149 4.6 7.7 1.0
CE2 A:TYR151 4.7 12.3 1.0
OD1 A:ASN149 5.0 11.5 1.0

Sodium binding site 2 out of 2 in 3la1

Go back to Sodium Binding Sites List in 3la1
Sodium binding site 2 out of 2 in the High Resolution Crystal Structure of Cypet Mutant A167I


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of High Resolution Crystal Structure of Cypet Mutant A167I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:26.2
occ:1.00
O A:HOH634 2.8 23.9 1.0
O A:LEU221 2.9 8.6 1.0
CB A:ALA206 3.6 10.0 1.0
CD2 A:PHE223 3.6 10.2 1.0
O A:GLN204 3.7 9.6 1.0
N A:ALA206 3.7 7.9 1.0
C A:LEU221 3.7 7.2 1.0
CE2 A:PHE223 3.9 11.1 1.0
CE1 A:TYR145 4.0 15.9 1.0
CG A:LEU221 4.1 10.6 1.0
C A:GLN204 4.2 7.9 1.0
CA A:ALA206 4.2 8.5 1.0
CA A:GLU222 4.3 7.8 1.0
N A:GLU222 4.3 7.9 1.0
C A:SER205 4.3 8.0 1.0
CD2 A:LEU221 4.4 15.6 1.0
CB A:GLN204 4.4 11.3 1.0
CB A:LEU221 4.4 9.9 1.0
CA A:SER205 4.5 7.7 1.0
N A:SER205 4.5 7.8 1.0
N A:PHE223 4.6 6.9 1.0
OH A:TYR145 4.7 18.2 1.0
C A:GLU222 4.7 7.5 1.0
CA A:LEU221 4.7 8.1 1.0
CG A:PHE223 4.8 8.5 1.0
CZ A:TYR145 4.8 15.2 1.0
CD1 A:TYR145 4.8 12.8 1.0

Reference:

X.Hu, R.Liu. Crystal Structure of Cypet To Be Published.
Page generated: Tue Dec 15 06:16:41 2020

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