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Sodium in PDB 3l27: Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant

Protein crystallography data

The structure of Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant, PDB code: 3l27 was solved by D.W.Leung, K.C.Prins, D.M.Borek, M.Farahbakhsh, J.M.Tufariello, P.Ramanan, J.C.Nix, L.A.Helgeson, Z.Otwinowski, R.B.Honzatko, C.F.Basler, G.K.Amarasinghe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.79 / 1.95
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 81.549, 81.549, 343.493, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 22.9

Other elements in 3l27:

The structure of Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant also contains other interesting chemical elements:

Potassium (K) 2 atoms
Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant (pdb code 3l27). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant, PDB code: 3l27:

Sodium binding site 1 out of 1 in 3l27

Go back to Sodium Binding Sites List in 3l27
Sodium binding site 1 out of 1 in the Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain R312A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na3

b:48.2
occ:1.00
O B:HOH114 2.1 19.9 1.0
O C:HOH177 2.2 30.0 1.0
O B:GLN288 2.4 29.0 1.0
O B:PRO285 2.8 25.9 1.0
O B:ILE286 3.4 23.4 1.0
C B:GLN288 3.5 28.7 1.0
O C:ILE286 3.6 21.5 1.0
C B:ILE286 3.8 23.1 1.0
N B:GLN288 3.8 33.3 1.0
O C:GLN288 3.8 26.2 1.0
C B:PRO285 4.0 25.1 1.0
CA B:GLN288 4.0 33.8 1.0
CB B:GLN288 4.1 38.3 1.0
CA B:ILE286 4.1 23.1 1.0
CD1 C:ILE286 4.2 24.9 1.0
N B:PHE287 4.4 21.4 1.0
C B:PHE287 4.5 23.8 1.0
N B:ILE286 4.5 24.2 1.0
CG B:GLN288 4.5 40.8 1.0
CB C:ALA290 4.5 18.5 1.0
C C:ILE286 4.6 21.7 1.0
N B:ASP289 4.7 27.3 1.0
CA C:ALA290 4.7 19.5 1.0
N B:ALA290 4.7 21.0 1.0
CG1 C:ILE286 4.8 23.7 1.0
C B:ASP289 4.9 21.8 1.0
N C:ALA290 4.9 20.4 1.0
CA B:PHE287 4.9 21.8 1.0
CB B:ALA290 4.9 20.8 1.0
CA B:ALA290 4.9 20.2 1.0

Reference:

D.W.Leung, K.C.Prins, D.M.Borek, M.Farahbakhsh, J.M.Tufariello, P.Ramanan, J.C.Nix, L.A.Helgeson, Z.Otwinowski, R.B.Honzatko, C.F.Basler, G.K.Amarasinghe. Structural Basis For Dsrna Recognition and Interferon Antagonism By Ebola VP35. Nat.Struct.Mol.Biol. V. 17 165 2010.
ISSN: ISSN 1545-9993
PubMed: 20081868
DOI: 10.1038/NSMB.1765
Page generated: Tue Dec 15 06:16:30 2020

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