Sodium in PDB 3l7x: The Crystal Structure of Smu.412C From Streptococcus Mutans UA159

The structure of The Crystal Structure of Smu.412C From Streptococcus Mutans UA159, PDB code: 3l7x was solved by X.-D.Su, Z.Y.Ye, X.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.27 / 1.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	53.348, 53.348, 141.059, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 21.3

The structure of The Crystal Structure of Smu.412C From Streptococcus Mutans UA159 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the The Crystal Structure of Smu.412C From Streptococcus Mutans UA159 (pdb code 3l7x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Smu.412C From Streptococcus Mutans UA159, PDB code: 3l7x:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of Smu.412C From Streptococcus Mutans UA159


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Smu.412C From Streptococcus Mutans UA159 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na141 b:25.7 occ:1.00 O A:HOH153 2.6 22.3 1.0 NE2 A:HIS99 2.8 17.7 1.0 O A:HOH147 2.9 16.9 1.0 NE2 A:HIS101 2.9 14.9 1.0 ND2 A:ASN86 3.2 19.9 1.0 CD2 A:HIS99 3.4 16.9 1.0 O A:HOH143 3.4 18.4 1.0 CB A:ASN86 3.6 15.0 1.0 CE1 A:HIS99 3.7 19.6 1.0 CG A:ASN86 3.8 15.8 1.0 CE1 A:HIS101 3.9 14.4 1.0 CD2 A:HIS101 3.9 14.7 1.0 CA A:GLN93 4.4 14.7 1.0 O A:GLY92 4.5 21.6 1.0 CG A:HIS99 4.5 16.8 1.0 N A:ASN86 4.5 14.4 1.0 ND1 A:HIS99 4.6 17.9 1.0 CA A:ASN86 4.7 16.1 1.0 N A:GLN93 4.8 17.6 1.0 O A:ASN86 4.8 18.7 1.0 C A:GLY92 4.8 22.2 1.0 OD1 A:ASN86 4.9 16.3 1.0 CG A:GLN93 5.0 17.5 1.0 CB A:GLN93 5.0 16.6 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of Smu.412C From Streptococcus Mutans UA159


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Smu.412C From Streptococcus Mutans UA159 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na142 b:30.1 occ:1.00 O A:GLU52 2.3 25.9 1.0 O A:HOH160 2.4 27.7 1.0 OG1 A:THR-9 2.5 31.5 1.0 OG A:SER-11 2.5 30.8 1.0 O A:GLY-8 2.6 26.9 1.0 O A:HOH180 2.6 30.8 1.0 CB A:SER-11 3.3 29.4 1.0 C A:GLU52 3.5 23.7 1.0 CB A:THR-9 3.7 29.8 1.0 C A:THR-9 3.7 32.2 1.0 C A:GLY-8 3.7 29.8 1.0 N A:GLY-8 3.9 32.0 1.0 O A:THR-9 4.0 31.6 1.0 CA A:THR-9 4.0 27.5 1.0 CB A:GLU52 4.1 20.6 1.0 N A:THR-9 4.1 29.2 1.0 CA A:GLU52 4.2 19.5 1.0 CA A:GLY-8 4.4 27.4 1.0 O A:HOH185 4.5 38.7 1.0 N A:MET53 4.5 21.3 1.0 O A:HOH156 4.5 26.1 1.0 CA A:SER-11 4.6 30.6 1.0 CA A:MET53 4.7 22.1 1.0 OE1 A:GLN57 4.7 23.4 1.0 O A:GLN-6 4.7 29.1 1.0 CG2 A:VAL47 4.8 21.1 1.0 C A:MET53 4.8 25.2 1.0 N A:GLY-7 4.8 27.9 1.0 C A:SER-11 4.9 31.9 1.0 CG2 A:THR-9 4.9 32.0 1.0 CA A:GLY-7 5.0 31.3 1.0 CG2 A:THR54 5.0 31.6 1.0 N A:THR54 5.0 26.2 1.0

X.-D.Su, Z.Y.Ye, X.Liu. The Crystal Structure of Smu.412C From Streptococcus Mutans UA159 To Be Published.