Sodium in the structure of Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi At 2.25A Resolution, Iodide Soak (pdb 3k9g)

The binding sites of Sodium atom in the structure of Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi At 2.25A Resolution, Iodide Soak (pdb code 3k9g). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 3k9g structure was solved by SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.2-2.2 Space group P43212 a (A) 55.810 b (A) 55.810 c (A) 200.900 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 22.3 Rfree (%) 26.6 Sodium Binding Sites: Sodium binding site 1 out of 1 in 3k9g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3k9g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Leu98, A: His99, A: Asn100, A: Ser102, A: Glu103, A: Hoh267, A: Hoh282, A: Hoh301, A: Hoh302, A: Hoh313, conact list: Atom Atom Distance (A) Na O A:Leu98 4.81 Na O A:His99 2.63 Na CB A:His99 4.85 Na ND1 A:His99 4.77 Na C A:His99 3.67 Na CA A:His99 4.14 Na N A:Asn100 4.80 Na N A:Ser102 4.13 Na CB A:Ser102 3.33 Na OG A:Ser102 2.26 Na CA A:Ser102 4.33 Na OE2 A:Glu103 4.67 Na O A:Hoh267 2.51 Na O A:Hoh282 2.48 Na O A:Hoh301 4.59 Na O A:Hoh302 4.35 Na O A:Hoh313 2.48 interactive model: