Sodium in PDB 3k9g: Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak

The structure of Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak, PDB code: 3k9g was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.20 / 2.25
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	55.810, 55.810, 200.900, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 26.6

The structure of Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak also contains other interesting chemical elements:

Iodine

(I)

12 atoms

The binding sites of Sodium atom in the Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak (pdb code 3k9g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak, PDB code: 3k9g:

Sodium binding site 1 out of 1 in the Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Plasmid Partition Protein From Borrelia Burgdorferi at 2.25A Resolution, Iodide Soak within 5.0Å range: probe atom residue distance (Å) B Occ A:Na300 b:29.2 occ:0.98 OG A:SER102 2.3 26.2 1.0 O A:HOH313 2.5 24.6 1.0 O A:HOH282 2.5 23.5 1.0 O A:HOH267 2.5 26.4 1.0 O A:HIS99 2.6 24.6 1.0 CB A:SER102 3.3 28.4 1.0 C A:HIS99 3.7 24.5 1.0 N A:SER102 4.1 27.0 1.0 CA A:HIS99 4.1 23.8 1.0 CA A:SER102 4.3 28.0 1.0 O A:HOH302 4.3 39.7 1.0 O A:HOH301 4.6 30.4 0.5 OE2 A:GLU103 4.7 34.0 1.0 ND1 A:HIS99 4.8 22.1 1.0 N A:ASN100 4.8 25.1 1.0 O A:LEU98 4.8 21.7 1.0 CB A:HIS99 4.9 24.3 1.0

J.Abendroth, A.S.Gardberg, J.I.Robinson, J.S.Christensen, B.L.Staker, P.J.Myler, L.J.Stewart, T.E.Edwards. Sad Phasing Using Iodide Ions in A High-Throughput Structural Genomics Environment. J Struct Funct Genomics V. 12 83 2011.
PubMed: 21359836
DOI: 10.1007/S10969-011-9101-7