Chemical elements
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    PDB 1jz2-1kvs
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    PDB 1mg2-1nsz
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    PDB 1p0s-1qjs
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    PDB 3k13-3l7x
      3k13
      3k1s
      3k1u
      3k2l
      3k2o
      3k2q
      3k3l
      3k4g
      3k55
      3k5i
      3k6a
      3k6n
      3k7f
      3k93
      3k9g
      3k9x
      3kam
      3kax
      3kbc
      3kbi
      3kbk
      3ked
      3ker
      3keu
      3kgd
      3kgq
      3kii
      3kl0
      3klb
      3kn4
      3knt
      3kqb
      3kqc
      3kqd
      3kqe
      3krs
      3kw8
      3kwm
      3kyj
      3kzw
      3l0o
      3l1o
      3l25
      3l27
      3l28
      3l52
      3l55
      3l6i
      3l6t
      3l7x
    PDB 3l88-3max
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    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in the structure of Crystal Structure of Putative Flavoprotein in Complex With Fmn (YP_213683.1) From Bacteroides Fragilis Nctc 9343 At 1.75 A Resolution (pdb 3klb)






The binding sites of Sodium atom in the structure of Crystal Structure of Putative Flavoprotein in Complex With Fmn (YP_213683.1) From Bacteroides Fragilis Nctc 9343 At 1.75 A Resolution (pdb code 3klb). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 3klb structure was solved by JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)27.8-1.8
Space groupP43212
a (A)96.764
b (A)96.764
c (A)47.882
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)14.8
Rfree (%)17.9


Sodium Binding Sites:

Sodium binding site 1 out of 1 in 3klb


Sodium binding site 1 out of 1 in 3klb
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 3klb
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 3klb. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Tyr132, A: Pro133, A: Asp134, A: Ile135, A: Val136, A: Trp137, A: Hoh195,

conact list:


AtomAtomDistance (A)
NaO A:Tyr1324.45
NaO A:Pro1332.32
NaC A:Pro1333.31
NaCA A:Pro1334.10
NaO A:Asp1344.91
NaN A:Asp1344.20
NaC A:Asp1344.30
NaCA A:Asp1344.46
NaO A:Ile1352.33
NaN A:Ile1354.05
NaC A:Ile1353.53
NaCA A:Ile1354.39
NaN A:Val1364.47
NaCA A:Val1364.57
NaN A:Trp1374.38
NaCD1 A:Trp1373.95
NaCG A:Trp1374.87
NaNE1 A:Trp1374.71
NaO A:Hoh1952.87

interactive model:




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