Sodium in PDB, part 41 (files: 1601-1640),
PDB 2qd8-2r22
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 1601-1640 (PDB 2qd8-2r22).
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2qd8 (Na: 1) - Hiv-1 Protease Mutant I84V with Potent Antiviral Inhibitor Grl-98065
Other atoms:
Cl (2);
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2qei (Na: 2) - Crystal Structure Analysis of Leut Complexed with L-Alanine, Sodium, and Clomipramine
Other atoms:
Cl (2);
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2qew (Na: 1) - Rat Cytosolic Pepck, in Complex with Manganese Ion.
Other atoms:
Mn (2);
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2qex (Na: 86) - Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
Other atoms:
Mg (116);
K (2);
Cd (5);
Cl (22);
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2qey (Na: 1) - Rat Cytosolic Pepck in Complex with Gtp
Other atoms:
Mn (3);
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2qf1 (Na: 1) - Rat Cytosolic Pepck in Complex with Oxaloacetic Acid.
Other atoms:
Mn (2);
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2qf2 (Na: 2) - Rat Cytosolic Pepck in Complex with Oxaloacetic Acid and Gdp.
Other atoms:
Mn (7);
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2qfp (Na: 11) - Crystal Structure of Red Kidney Bean Purple Acid Phosphatase in Complex with Fluoride
Other atoms:
F (4);
Zn (4);
Fe (4);
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2qhf (Na: 2) - Mycobacterium Tuberculosis Chorismate Synthase in Complex with Nca
Other atoms:
Cl (1);
-
2qju (Na: 2) - Crystal Structure of An Nss Homolog with Bound Antidepressant
Other atoms:
Cl (1);
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2qjy (Na: 1) - Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2
Other atoms:
Sr (9);
Fe (30);
Cl (2);
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2qk9 (Na: 1) - Human Rnase H Catalytic Domain Mutant D210N in Complex with 18-Mer Rna/Dna Hybrid
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2qkf (Na: 1) - Crystal Structure of 3-Deoxy-D-Manno-Octulosonate 8- Phosphate Synthase (KDO8PS) From Neisseria Meningitidis
Other atoms:
Cl (5);
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2qm2 (Na: 1) - Putative Hopj Type III Effector Protein From Vibrio Parahaemolyticus
Other atoms:
K (1);
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2qmw (Na: 1) - The Crystal Structure of the Prephenate Dehydratase (Pdt) From Staphylococcus Aureus Subsp. Aureus MU50
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2qnw (Na: 1) - Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
Other atoms:
Zn (5);
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2qoe (Na: 1) - Human Dipeptidyl Peptidase IV in Complex with A Triazolopiperazine-Based Beta Amino Acid Inhibitor
Other atoms:
F (12);
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2qqu (Na: 1) - Crystal Structure of A Cell-Wall Invertase (D239A) From Arabidopsis Thaliana in Complex with Sucrose
Other atoms:
Zn (4);
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2qqv (Na: 2) - Crystal Structure of A Cell-Wall Invertase (E203A) From Arabidopsis Thaliana in Complex with Sucrose
Other atoms:
Zn (4);
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2qr7 (Na: 1) - 2.0A X-Ray Structure of C-Terminal Kinase Domain of P90 Ribosomal S6 Kinase 2: Se-Met Derivative
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2qr8 (Na: 1) - 2.0A X-Ray Structure of C-Terminal Kinase Domain of P90 Ribosomal S6 Kinase 2 (RSK2)
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2qsv (Na: 1) - Crystal Structure of Protein of Unknown Function From Porphyromonas Gingivalis W83
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2qt9 (Na: 1) - Human Dipeptidyl Peptidase IV/CD26 in Complex with A 4-Aryl Cyclohexylalanine Inhibitor
Other atoms:
F (2);
-
2qtb (Na: 1) - Human Dipeptidyl Peptidase IV/CD26 in Complex with A 4-Aryl Cyclohexylalanine Inhibitor
Other atoms:
F (4);
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2qv6 (Na: 4) - Gtp Cyclohydrolase III From M. Jannaschii (MJ0145) Complexed with Gtp and Metal Ions
Other atoms:
K (4);
Ca (4);
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2qw1 (Na: 2) - Glucose/Galactose Binding Protein Bound to 3-O-Methyl D- Glucose
Other atoms:
Ca (1);
-
2qwl (Na: 4) - Crystal Structure of Bovine HSC70 (1-394AA)in the Adp State
Other atoms:
Mg (2);
-
2qwm (Na: 4) - Crystal Structure of Bovine HSC70 (1-394AA)in the Adp*VI State
Other atoms:
Mg (2);
V (2);
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2qwn (Na: 2) - Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-386AA)R171C and Bovine Auxilin (810-910AA) D876C in the Adp*Pi State
Other atoms:
Mg (1);
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2qwo (Na: 2) - Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA) D876C in the Adp*Pi Form #1
Other atoms:
Mg (1);
-
2qwp (Na: 2) - Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA) D876C in the Adp*Pi Form #2
Other atoms:
Mg (1);
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2qxf (Na: 1) - Product Bound Structure of Exonuclease I at 1.5 Angstrom Resolution
Other atoms:
Mg (2);
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2qz2 (Na: 1) - Crystal Structure of A Glycoside Hydrolase Family 11 Xylanase From Aspergillus Niger in Complex with Xylopentaose
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2qz7 (Na: 7) - The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)
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2qzi (Na: 7) - The Crystal Structure of A Conserved Protein of Unknown Function From Streptococcus Thermophilus Lmg 18311.
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2r0w (Na: 1) - PFA2 Fab Complexed with ABETA1-8
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2r1s (Na: 5) - Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.4 A (BR1)
Other atoms:
Br (2);
Mg (1);
-
2r20 (Na: 5) - Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.3 A (BR2)
Other atoms:
Br (2);
Mg (1);
-
2r21 (Na: 4) - Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn)
Other atoms:
Br (2);
Mn (1);
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2r22 (Na: 4) - Structure of the Native Rna Tridecamer R(Gcguuugaaacgc) at 1.5 A (Natmn)
Other atoms:
Mn (1);
Page generated: Wed Nov 13 12:58:50 2024
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