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Sodium in PDB 2qwo: Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1

Enzymatic activity of Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1

All present enzymatic activity of Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1, PDB code: 2qwo was solved by J.Jiang, E.G.Maes, L.Wang, A.B.Taylor, A.P.Hinck, E.M.Lafer, R.Sousa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.69 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.698, 58.543, 226.236, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 22.2

Other elements in 2qwo:

The structure of Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1 (pdb code 2qwo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1, PDB code: 2qwo:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 2qwo

Go back to Sodium Binding Sites List in 2qwo
Sodium binding site 1 out of 2 in the Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na489

b:22.9
occ:1.00
 OD2 A:ASP10 2.7 27.8 1.0
O3B A:ADP487 2.7 25.0 1.0
O A:TYR15 2.8 26.5 1.0
O A:HOH3182 2.8 20.4 1.0
O A:HOH3193 3.1 21.3 1.0
CG A:ASP10 3.3 25.5 1.0
O3A A:ADP487 3.4 25.0 1.0
OD1 A:ASP10 3.5 25.4 1.0
PB A:ADP487 3.5 25.9 1.0
O A:HOH3167 3.6 15.0 1.0
C A:TYR15 3.7 26.1 1.0
MG A:MG491 3.8 17.6 1.0
O1B A:ADP487 3.9 26.9 1.0
CA A:GLY12 4.0 23.9 1.0
PA A:ADP487 4.1 28.0 1.0
O1A A:ADP487 4.2 25.3 1.0
O2A A:ADP487 4.3 26.7 1.0
CB A:TYR15 4.3 26.1 1.0
N A:SER16 4.4 25.2 1.0
CA A:SER16 4.4 24.9 1.0
N A:GLY12 4.5 23.6 1.0
CA A:TYR15 4.5 25.9 1.0
CB A:ASP10 4.5 26.3 1.0
O A:HOH3152 4.5 15.7 1.0
O A:ASP366 4.7 17.9 1.0
O A:ASP10 4.7 25.0 1.0
N A:TYR15 4.7 25.7 1.0
C A:SER16 4.8 25.0 1.0
O2B A:ADP487 4.9 27.4 1.0
O A:HOH3435 5.0 18.2 1.0

Sodium binding site 2 out of 2 in 2qwo

Go back to Sodium Binding Sites List in 2qwo
Sodium binding site 2 out of 2 in the Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Disulfide-Bond-Crosslinked Complex of Bovine HSC70 (1-394AA)R171C and Bovine Auxilin (810-910AA)D876C in the Adp*Pi Form #1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na490

b:26.2
occ:1.00
 O4 A:PO4488 2.8 16.4 1.0
OG1 A:THR204 2.8 23.5 1.0
OD1 A:ASP199 3.0 27.4 1.0
OD2 A:ASP206 3.0 24.4 1.0
O A:THR204 3.2 24.2 1.0
O A:HOH3435 3.3 18.2 1.0
CG A:ASP199 3.4 24.9 1.0
O A:ASP199 3.5 25.6 1.0
P A:PO4488 3.8 17.2 1.0
C A:THR204 3.8 24.0 1.0
OD2 A:ASP199 3.9 26.4 1.0
O A:HOH3433 3.9 17.5 1.0
O3 A:PO4488 3.9 16.7 1.0
MG A:MG491 4.0 17.6 1.0
N A:GLY201 4.0 24.6 1.0
O1 A:PO4488 4.0 16.3 1.0
CG A:ASP206 4.0 24.8 1.0
CB A:THR204 4.1 23.5 1.0
C A:ASP199 4.2 25.1 1.0
CB A:ASP199 4.3 24.4 1.0
O A:HOH3165 4.3 18.5 1.0
N A:ASP206 4.3 25.1 1.0
CA A:GLY201 4.3 24.9 1.0
O A:HOH3162 4.4 22.5 1.0
N A:PHE205 4.4 24.1 1.0
O A:HOH3174 4.4 18.6 1.0
CB A:ASP206 4.5 24.8 1.0
CA A:THR204 4.5 23.9 1.0
CA A:PHE205 4.6 24.8 1.0
O2B A:ADP487 4.7 27.4 1.0
C A:PHE205 4.8 24.6 1.0
C A:LEU200 4.8 24.9 1.0
N A:LEU200 4.8 25.1 1.0
CA A:ASP199 4.9 24.6 1.0
N A:THR204 4.9 23.6 1.0
CA A:LEU200 4.9 25.0 1.0
OE1 A:GLU175 5.0 26.0 1.0

Reference:

J.Jiang, E.G.Maes, A.B.Taylor, L.Wang, A.P.Hinck, E.M.Lafer, R.Sousa. Structural Basis of J Cochaperone Binding and Regulation of HSP70. Mol.Cell V. 28 422 2007.
ISSN: ISSN 1097-2765
PubMed: 17996706
DOI: 10.1016/J.MOLCEL.2007.08.022
Page generated: Mon Oct 7 04:05:07 2024

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