Sodium in PDB 2qnw: Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein

The structure of Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein, PDB code: 2qnw was solved by V.V.Lunin, A.Wernimont, J.Lew, W.Qiu, L.Lin, A.Hassanali, I.Kozieradzki, Y.Zhao, M.Schapira, A.Bochkarev, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.Edwards, R.Hui, S.Brokx, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.88 / 1.90
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	38.814, 38.814, 104.617, 90.00, 90.00, 120.00
R / Rfree (%)	17.2 / 23

The structure of Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

The binding sites of Sodium atom in the Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein (pdb code 2qnw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein, PDB code: 2qnw:

Sodium binding site 1 out of 1 in the Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na85 b:33.3 occ:1.00 OE1 A:GLU62 1.5 33.2 0.5 O A:HOH186 2.1 59.1 1.0 OE2 A:GLU62 2.4 33.5 0.5 CD A:GLU62 2.4 31.8 0.5 OD1 A:ASP61 2.6 31.8 0.5 OE2 A:GLU62 2.8 31.6 0.5 CD A:GLU62 3.4 31.1 0.5 CG A:ASP61 3.6 29.3 0.5 CG A:GLU62 3.8 29.6 0.5 CG A:GLU62 3.8 30.5 0.5 OD2 A:ASP61 3.8 34.1 0.5 O A:HOH99 4.4 48.6 1.0 OE1 A:GLU62 4.5 32.4 0.5 CB A:ASP61 4.6 25.6 0.5 N A:ASP61 4.6 25.7 1.0 N A:GLU62 4.8 26.7 1.0 CB A:ASP61 4.9 27.1 0.5

V.V.Lunin, A.Wernimont, J.Lew, W.Qiu, L.Lin, A.Hassanali, I.Kozieradzki, Y.Zhao, M.Schapira, A.Bochkarev, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.Edwards, R.Hui, S.Brokx. Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein. To Be Published.