Atomistry » Sodium » PDB 2qd8-2r22 » 2qnw
Atomistry »
  Sodium »
    PDB 2qd8-2r22 »
      2qnw »

Sodium in PDB 2qnw: Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein

Protein crystallography data

The structure of Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein, PDB code: 2qnw was solved by V.V.Lunin, A.Wernimont, J.Lew, W.Qiu, L.Lin, A.Hassanali, I.Kozieradzki, Y.Zhao, M.Schapira, A.Bochkarev, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.Edwards, R.Hui, S.Brokx, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.88 / 1.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 38.814, 38.814, 104.617, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 23

Other elements in 2qnw:

The structure of Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein also contains other interesting chemical elements:

Zinc (Zn) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein (pdb code 2qnw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein, PDB code: 2qnw:

Sodium binding site 1 out of 1 in 2qnw

Go back to Sodium Binding Sites List in 2qnw
Sodium binding site 1 out of 1 in the Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na85

b:33.3
occ:1.00
OE1 A:GLU62 1.5 33.2 0.5
O A:HOH186 2.1 59.1 1.0
OE2 A:GLU62 2.4 33.5 0.5
CD A:GLU62 2.4 31.8 0.5
OD1 A:ASP61 2.6 31.8 0.5
OE2 A:GLU62 2.8 31.6 0.5
CD A:GLU62 3.4 31.1 0.5
CG A:ASP61 3.6 29.3 0.5
CG A:GLU62 3.8 29.6 0.5
CG A:GLU62 3.8 30.5 0.5
OD2 A:ASP61 3.8 34.1 0.5
O A:HOH99 4.4 48.6 1.0
OE1 A:GLU62 4.5 32.4 0.5
CB A:ASP61 4.6 25.6 0.5
N A:ASP61 4.6 25.7 1.0
N A:GLU62 4.8 26.7 1.0
CB A:ASP61 4.9 27.1 0.5

Reference:

V.V.Lunin, A.Wernimont, J.Lew, W.Qiu, L.Lin, A.Hassanali, I.Kozieradzki, Y.Zhao, M.Schapira, A.Bochkarev, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.Edwards, R.Hui, S.Brokx. Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein. To Be Published.
Page generated: Tue Dec 15 05:55:17 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy