Sodium in PDB 2qz7: The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)

The structure of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2), PDB code: 2qz7 was solved by K.Tan, X.Xu, Z.Zheng, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.18 / 2.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	67.821, 67.821, 170.866, 90.00, 90.00, 90.00
R / Rfree (%)	19 / 22.5

The binding sites of Sodium atom in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) (pdb code 2qz7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 7 binding sites of Sodium where determined in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2), PDB code: 2qz7:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7;

Sodium binding site 1 out of 7 in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na193 b:39.9 occ:1.00 O A:GLY84 2.2 42.2 1.0 O A:HOH207 2.3 36.4 1.0 O A:TRP30 2.3 43.7 1.0 O A:GLY82 2.5 46.7 1.0 C A:GLY82 3.4 46.0 1.0 C A:TRP30 3.4 43.8 1.0 C A:GLY84 3.5 42.5 1.0 CG1 A:VAL88 3.8 43.0 1.0 CA A:GLY82 3.9 45.0 1.0 CA A:ASP31 4.1 46.5 1.0 CD A:PRO32 4.2 47.8 1.0 N A:TRP30 4.2 42.6 1.0 N A:ASP31 4.2 45.5 1.0 OD1 A:ASP31 4.3 45.0 1.0 C A:GLN83 4.3 45.0 1.0 N A:GLY84 4.3 42.6 1.0 N A:PHE85 4.4 43.5 1.0 O A:HOH208 4.4 40.3 1.0 O A:HOH224 4.4 43.1 1.0 CA A:TRP30 4.4 42.7 1.0 N A:GLN83 4.4 45.8 1.0 CA A:GLY84 4.5 43.1 1.0 CA A:PHE85 4.5 44.6 1.0 O A:GLN83 4.5 44.4 1.0 O A:GLY86 4.5 45.3 1.0 N A:PRO32 4.7 47.7 1.0 C A:ASP31 4.7 47.3 1.0 CG2 A:VAL88 4.8 42.6 1.0 CA A:GLN83 4.8 46.0 1.0 CB A:VAL88 4.9 43.4 1.0 C A:PHE85 4.9 45.6 1.0

Sodium binding site 2 out of 7 in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na194 b:30.6 occ:1.00 O A:HOH250 2.2 28.2 1.0 OE1 A:GLU89 2.3 42.4 1.0 O A:SER79 2.4 44.5 1.0 O A:LEU42 2.4 41.2 1.0 OD1 A:ASP43 2.4 45.6 1.0 CD A:GLU89 3.2 41.6 1.0 OE2 A:GLU89 3.3 44.3 1.0 C A:SER79 3.3 45.1 1.0 C A:LEU42 3.5 41.7 1.0 NE2 A:HIS41 3.6 43.2 1.0 N A:SER79 3.6 45.2 1.0 CG A:ASP43 3.6 44.9 1.0 CD2 A:HIS41 3.6 42.6 1.0 CA A:ASP43 3.8 42.6 1.0 N A:ASP43 4.0 41.9 1.0 CA A:SER79 4.1 45.4 1.0 CH2 A:TRP30 4.1 42.1 1.0 CB A:ASP43 4.3 41.7 1.0 N A:ARG80 4.3 45.4 1.0 O A:HOH212 4.5 33.0 1.0 O A:HOH198 4.5 25.8 1.0 CA A:ARG80 4.5 46.2 1.0 OD2 A:ASP43 4.6 46.0 1.0 CB A:HIS78 4.6 43.1 1.0 N A:LEU42 4.6 41.7 1.0 CG A:GLU89 4.6 41.9 1.0 C A:HIS78 4.6 44.2 1.0 CA A:LEU42 4.7 41.4 1.0 CD2 A:PHE64 4.7 43.4 1.0 CZ2 A:TRP30 4.7 40.3 1.0 CE1 A:HIS41 4.8 42.8 1.0 CG A:PHE64 4.8 42.2 1.0 CB A:PHE64 4.9 40.5 1.0 CG A:HIS41 4.9 42.8 1.0 CA A:HIS78 4.9 44.4 1.0 CB A:SER79 5.0 46.1 1.0

Sodium binding site 3 out of 7 in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na195 b:53.0 occ:1.00 O A:PHE120 2.1 44.5 1.0 O A:HOH253 2.2 43.4 1.0 O A:VAL123 2.4 47.1 1.0 OG1 A:THR126 2.7 42.3 1.0 C A:PHE120 3.3 44.9 1.0 CG2 A:THR126 3.4 43.3 1.0 CB A:THR126 3.6 45.1 1.0 C A:VAL123 3.6 47.3 1.0 N A:THR126 4.1 45.5 1.0 N A:ASP121 4.2 45.9 1.0 CA A:PHE120 4.2 44.1 1.0 CA A:ASP121 4.3 46.7 1.0 O A:GLY141 4.4 46.3 1.0 N A:VAL123 4.4 46.4 1.0 CB A:PHE120 4.4 42.8 1.0 CA A:THR126 4.4 45.0 1.0 CA A:VAL123 4.4 46.7 1.0 N A:SER124 4.6 47.3 1.0 CA A:SER124 4.6 46.9 1.0 N A:ASN125 4.6 45.8 1.0 C A:ASP121 4.7 46.7 1.0 CB A:VAL123 4.7 47.8 1.0 C A:SER124 4.8 46.8 1.0 O A:ASP121 4.8 46.9 1.0 O A:THR126 4.9 46.1 1.0

Sodium binding site 4 out of 7 in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na193 b:40.3 occ:1.00 O B:HOH246 2.1 40.4 1.0 O B:GLY82 2.2 54.0 1.0 O B:HOH243 2.2 36.8 1.0 O B:GLY84 2.3 55.1 1.0 O B:TRP30 2.4 51.8 1.0 C B:GLY84 3.3 56.0 1.0 C B:GLY82 3.4 54.4 1.0 C B:TRP30 3.5 50.9 1.0 O B:HOH199 3.7 43.2 1.0 CG1 B:VAL88 3.8 54.6 1.0 N B:GLY84 3.8 55.9 1.0 OD1 B:ASP31 3.9 50.8 1.0 CA B:ASP31 4.0 51.0 1.0 N B:ASP31 4.2 51.5 1.0 N B:PHE85 4.2 56.6 1.0 C B:GLN83 4.2 55.0 1.0 CA B:GLY84 4.2 55.7 1.0 CA B:GLY82 4.2 54.2 1.0 N B:TRP30 4.2 48.1 1.0 O B:HOH221 4.3 41.9 1.0 CA B:PHE85 4.3 57.5 1.0 CG2 B:VAL88 4.4 54.9 1.0 O B:GLY86 4.4 55.9 1.0 N B:GLN83 4.4 54.3 1.0 CA B:TRP30 4.5 50.4 1.0 CD B:PRO32 4.5 52.0 1.0 CA B:GLN83 4.6 55.0 1.0 O B:GLN83 4.7 55.1 1.0 C B:PHE85 4.7 57.5 1.0 CB B:VAL88 4.7 55.0 1.0 CG B:ASP31 4.8 50.2 1.0 CB B:ASP31 4.9 49.8 1.0 C B:ASP31 5.0 51.5 1.0

Sodium binding site 5 out of 7 in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na194 b:41.4 occ:1.00 OE2 B:GLU89 2.2 51.3 1.0 OD1 B:ASP43 2.3 49.7 1.0 O B:LEU42 2.4 51.4 1.0 O B:HOH239 2.4 39.4 1.0 O B:SER79 2.5 55.5 1.0 CD B:GLU89 3.0 52.3 1.0 OE1 B:GLU89 3.1 53.4 1.0 C B:LEU42 3.4 52.3 1.0 CG B:ASP43 3.4 51.9 1.0 C B:SER79 3.5 55.6 1.0 CA B:ASP43 3.6 51.6 1.0 N B:SER79 3.7 54.5 1.0 NE2 B:HIS41 3.7 55.0 1.0 CD2 B:HIS41 3.7 51.2 1.0 N B:ASP43 3.9 51.4 1.0 CB B:ASP43 4.0 50.4 1.0 CH2 B:TRP30 4.1 50.8 1.0 CA B:SER79 4.2 54.9 1.0 N B:ARG80 4.4 55.9 1.0 OD2 B:ASP43 4.4 54.2 1.0 O B:HOH214 4.5 33.0 1.0 CG B:GLU89 4.5 51.1 1.0 CB B:HIS78 4.6 53.9 1.0 CA B:ARG80 4.7 57.2 1.0 N B:LEU42 4.7 53.8 1.0 CA B:LEU42 4.7 52.6 1.0 CD2 B:PHE64 4.7 50.7 1.0 CZ2 B:TRP30 4.7 50.4 1.0 C B:HIS78 4.7 53.6 1.0 C B:ASP43 4.8 51.7 1.0 CG B:PHE64 4.9 51.7 1.0 CZ3 B:TRP30 5.0 51.0 1.0 CA B:HIS78 5.0 53.9 1.0 N B:ILE44 5.0 51.0 1.0

Sodium binding site 6 out of 7 in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na195 b:39.0 occ:1.00 O B:HOH244 2.2 38.2 1.0 O B:VAL123 2.3 51.8 1.0 O B:PHE120 2.3 49.8 1.0 O B:HOH238 2.4 34.0 1.0 OG1 B:THR126 2.8 49.3 1.0 C B:PHE120 3.5 49.3 1.0 C B:VAL123 3.5 51.3 1.0 CG2 B:THR126 3.6 49.9 1.0 CB B:THR126 3.7 50.5 1.0 N B:THR126 4.0 49.7 1.0 CA B:ASP121 4.1 47.9 1.0 N B:VAL123 4.2 50.1 1.0 N B:ASP121 4.2 49.0 1.0 CA B:VAL123 4.3 50.6 1.0 O B:HOH232 4.5 38.6 1.0 CA B:THR126 4.5 50.1 1.0 O B:GLY141 4.5 51.1 1.0 N B:ASN125 4.6 50.7 1.0 O B:HOH208 4.6 30.6 1.0 N B:SER124 4.6 50.6 1.0 C B:ASP121 4.6 47.3 1.0 CB B:VAL123 4.6 50.5 1.0 CA B:PHE120 4.6 49.0 1.0 C B:SER124 4.7 51.0 1.0 CA B:SER124 4.8 50.1 1.0 CB B:PHE120 4.9 49.4 1.0

Sodium binding site 7 out of 7 in the The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na196 b:59.8 occ:1.00 OG B:SER33 2.4 50.9 1.0 O B:HOH201 2.5 59.0 1.0 O B:ARG37 2.5 55.0 1.0 O B:PRO34 2.7 52.5 1.0 C B:ARG37 3.6 54.7 1.0 CB B:SER33 3.6 53.6 1.0 O B:SER33 3.7 53.3 1.0 C B:PRO34 3.7 52.7 1.0 C B:SER33 3.8 53.4 1.0 O B:PRO38 3.9 56.8 1.0 O B:TRP35 3.9 51.5 1.0 C B:PRO38 4.0 57.0 1.0 N B:ARG37 4.1 52.1 1.0 CA B:SER33 4.1 53.3 1.0 C B:TRP35 4.2 51.7 1.0 CA B:TRP35 4.2 51.8 1.0 N B:PRO39 4.2 57.5 1.0 CA B:ARG37 4.3 53.1 1.0 N B:TRP35 4.4 52.1 1.0 CA B:PRO39 4.4 57.3 1.0 N B:PRO34 4.4 53.2 1.0 N B:SER33 4.5 53.4 1.0 N B:PRO38 4.5 56.2 1.0 CB B:ARG37 4.6 52.3 1.0 CA B:PRO38 4.6 56.9 1.0 CA B:PRO34 4.7 52.8 1.0 O B:HOH203 4.8 44.8 1.0 N B:ASP36 4.9 50.8 1.0

K.Tan, X.Xu, Z.Zheng, A.Savchenko, A.Edwards, A.Joachimiak. The Crystal Structure of A Homologue of Telluride Resistance Protein (Terd), SCO6318 From Streptomyces Coelicolor A3(2). To Be Published.