Atomistry » Sodium » PDB 2qd8-2r22 » 2qjy
Atomistry »
  Sodium »
    PDB 2qd8-2r22 »
      2qjy »

Sodium in PDB 2qjy: Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2

Enzymatic activity of Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2

All present enzymatic activity of Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2:
1.10.2.2;

Protein crystallography data

The structure of Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2, PDB code: 2qjy was solved by L.Esser, D.Xia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 351.891, 147.042, 161.312, 90.00, 104.25, 90.00
R / Rfree (%) 22.6 / 25.1

Other elements in 2qjy:

The structure of Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2 also contains other interesting chemical elements:

Strontium (Sr) 9 atoms
Iron (Fe) 30 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2 (pdb code 2qjy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2, PDB code: 2qjy:

Sodium binding site 1 out of 1 in 2qjy

Go back to Sodium Binding Sites List in 2qjy
Sodium binding site 1 out of 1 in the Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Rhodobacter Sphaeroides Double Mutant with Stigmatellin and UQ2 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Na2001

b:62.4
occ:1.00
O R:SER87 2.3 65.7 1.0
O I:SER87 2.5 55.0 1.0
O I:HOH2003 2.6 48.6 1.0
OE1 I:GLN92 2.7 45.9 1.0
O R:HOH2002 2.7 55.7 1.0
OE1 R:GLN92 2.9 55.4 1.0
NE2 R:GLN92 3.2 55.0 1.0
CD I:GLN92 3.3 46.8 1.0
CD R:GLN92 3.4 56.0 1.0
NE2 I:GLN92 3.4 45.7 1.0
C R:SER87 3.5 64.7 1.0
C I:SER87 3.6 52.6 1.0
CA R:VAL88 4.0 64.8 1.0
CA I:VAL88 4.1 51.4 1.0
OG I:SER87 4.1 49.2 1.0
N R:GLN89 4.2 66.0 1.0
N R:VAL88 4.2 65.3 1.0
CG R:GLN89 4.2 69.3 1.0
OG R:SER87 4.3 59.0 1.0
N I:VAL88 4.3 52.6 1.0
N I:GLN89 4.4 54.2 1.0
CG I:GLN89 4.4 60.5 1.0
C R:VAL88 4.5 65.7 1.0
CA R:SER87 4.6 63.8 1.0
CB I:SER87 4.6 50.3 1.0
CB R:SER87 4.6 62.2 1.0
NE2 R:GLN89 4.7 71.2 1.0
CG I:GLN92 4.7 47.0 1.0
CA I:SER87 4.7 52.1 1.0
C I:VAL88 4.7 52.9 1.0
NE2 I:GLN89 4.8 62.2 1.0
CG R:GLN92 4.8 55.7 1.0
CL I:CL2004 4.9 67.2 1.0
CB R:GLN89 4.9 68.2 1.0

Reference:

L.Esser, M.Elberry, F.Zhou, C.A.Yu, L.Yu, D.Xia. Inhibitor-Complexed Structures of the Cytochrome BC1 From the Photosynthetic Bacterium Rhodobacter Sphaeroides. J.Biol.Chem. V. 283 2846 2008.
ISSN: ISSN 0021-9258
PubMed: 18039651
DOI: 10.1074/JBC.M708608200
Page generated: Tue Dec 15 05:55:12 2020

Last articles

Zn in 7RRP
Zn in 7OKY
Zn in 7OL0
Zn in 7OKX
Zn in 7ONB
Zn in 7RSF
Zn in 7OUF
Zn in 7OUG
Zn in 7OUH
Zn in 7RGN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy