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Sodium in PDB, part 224 (files: 8921-8960), PDB 6u7o-6v04

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8921-8960 (PDB 6u7o-6v04).
  1. 6u7o (Na: 1) - Hiv-1 Wild Type Protease with Grl-00819A, with Phenyl-Boronic-Acid As P2'-Ligand and with A 6-5-5-Ring Fused Crown-Like Tetrahydropyranofuran As the P2-Ligand
    Other atoms: Cl (4);
  2. 6u7p (Na: 1) - Hiv-1 Wild Type Protease with Grl-03119A, with Phenyl-Boronic-Acid As P2'-Ligand and with A Hexahydro-4H-Furo-Pyran As the P2-Ligand
    Other atoms: Cl (5);
  3. 6u8t (Na: 1) - Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin
  4. 6u98 (Na: 1) - HSP90A Ntd K58R Bound Reversibly to Sulfonyl Fluoride 6
    Other atoms: F (1); K (1); I (1);
  5. 6u9j (Na: 1) - Crystal Structure of Chux
  6. 6u9u (Na: 6) - Structure of GM9_TH8SEQ732127 Fab
  7. 6uai (Na: 3) - Imidazole-Triggered Ras-Specific Subtilisin SUBT_BACAM Complexed with Ysam Peptide
    Other atoms: Cl (1);
  8. 6uao (Na: 1) - Imidazole-Triggered Ras-Specific Subtilisin SUBT_BACAM Complexed with the Peptide Eeysam
    Other atoms: Cl (1);
  9. 6uaq (Na: 1) - Crystal Structure of A GH128 (Subgroup I) Endo-Beta-1,3-Glucanase From Amycolatopsis Mediterranei (AMGH128_I)
  10. 6ube (Na: 2) - Azide-Triggered Subtilisin SUBT_BACAM Complexed with the Peptide Lfral
  11. 6ubg (Na: 1) - Structure of the MM2 Erbin Pdz Variant in Complex with A High-Affinity Peptide
  12. 6ubh (Na: 3) - Structure of the MM7 Erbin Pdz Variant in Complex with A High-Affinity Peptide
  13. 6ubn (Na: 1) - Crystal Structure of D678E Goxa Bound to Glycine
    Other atoms: Mg (4);
  14. 6ubv (Na: 3) - The Structure of the Streptococcus Gordonii Surface Protein Sspb in Complex with Tev Peptide Provides Clues to the Adherence of Oral Streptococcal Adherence to Salivary Agglutinin
    Other atoms: Ca (4);
  15. 6ucz (Na: 5) - Crystal Structure of Dihydropteroate Synthase From Anaplasma Phagocytophilum with Bound 6-Hydroxymethylpterin-Monophosphate
  16. 6uf0 (Na: 2) - Crystal Structure of N-(4-((4-Methoxy-N-(2,2,2-Trifluoroethyl)Phenyl) Sulfonamido)Isoquinolin-1-Yl)-N-((4-Methoxyphenyl)Sulfonyl)Glycine Bound to Human KEAP1 Kelch Domain
    Other atoms: F (3);
  17. 6ufc (Na: 1) - Carbonic Anhydrase 2 with Inhibitor (2Z)-2-[(4-Methoxyphenyl) Methylidene]-3-Oxo-N-(4-Sulfamoylphenyl)Butanamide (11D/D4)
    Other atoms: Zn (1);
  18. 6ufi (Na: 1) - W96Y Oxalate Decarboxylase (Bacillus Subtilis)
    Other atoms: Mn (2); Cl (2);
  19. 6ug6 (Na: 2) - C3 Symmetric Peptide Design Number 1, Sporty, Crystal Form 2
  20. 6ugb (Na: 3) - C3 Symmetric Peptide Design Number 2, Baby Basil
    Other atoms: Cl (2); Zn (1);
  21. 6ugc (Na: 26) - C3 Symmetric Peptide Design Number 3
    Other atoms: Cd (6);
  22. 6ugk (Na: 2) - Crystal Structure of Circularly Permuted Human Taspase-1
    Other atoms: Cl (4);
  23. 6uio (Na: 6) - Crystal Structure of Mouse Cres (Cystatin-Related Epididymal Spermatogenic)
    Other atoms: I (26); Cl (8);
  24. 6uj7 (Na: 3) - Crystal Structure of Hla-B*07:02 with R140Q Mutant IDH2 Peptide
    Other atoms: K (1);
  25. 6ukk (Na: 1) - Crystal Structure of A Domain-Swapped Fluorogen Activating Protein DIB3 Dimer
  26. 6uof (Na: 1) - 1.2 Angstrom Resolution Crystal Structure of Cbs Domains of Transcriptional Regulator From Streptococcus Pneumoniae
    Other atoms: Cl (1);
  27. 6uok (Na: 6) - Y271G Dna Polymerase Beta Substrate Complex with Templating Cytosine and Incoming R8-Oxo-Gtp
    Other atoms: Mg (1); Mn (6); Cl (1);
  28. 6uol (Na: 3) - Y271G Dna Polymerase Beta Substrate Complex with A Templating Cytosine and Incoming Rgtp
    Other atoms: Mn (5); Cl (1);
  29. 6uom (Na: 4) - Y271G Dna Polymerase Beta Ternary Complex with Templating Adenine and Incoming R8-Oxo-Gtp
    Other atoms: Mn (2);
  30. 6usa (Na: 2) - Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and GSK1-Bound Form
    Other atoms: K (10); Cl (4);
  31. 6utm (Na: 3) - Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase
  32. 6utn (Na: 2) - Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase
  33. 6uto (Na: 1) - Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase
  34. 6uw4 (Na: 1) - Cryo-Em Structure of Human TRPV3 Determined in Lipid Nanodisc
  35. 6uxc (Na: 2) - 1.65A Resolution Structure of the Hypothetical Protein CT253 From Chlamydia Trachomatis
  36. 6uy9 (Na: 1) - Crystal Structure of the STAC3 Tandem SH3 Domains - P269R, W284S
  37. 6uzm (Na: 1) - Hla-B*15:02 Complexed with A Synthetic Peptide
  38. 6uzp (Na: 1) - Hla-B*15:01 Complexed with A Synthetic Peptide
  39. 6uzs (Na: 1) - Hla-B*15:01 Complexed with A Synthetic Peptide
  40. 6v04 (Na: 1) - DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus
    Other atoms: Mg (1); Cl (3);
Page generated: Sat Sep 25 14:52:04 2021

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