Sodium in PDB 6u8t: Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin

The structure of Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin, PDB code: 6u8t was solved by S.Kumar, S.Mattoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.41 / 2.39
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.652, 62.957, 164.342, 90.00, 93.15, 90.00
R / Rfree (%)	19.9 / 24.5

The binding sites of Sodium atom in the Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin (pdb code 6u8t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin, PDB code: 6u8t:

Sodium binding site 1 out of 1 in the Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na4001 b:37.2 occ:0.77 OE2 A:GLU3876 2.6 31.9 1.0 OG A:SER3708 2.6 23.4 1.0 CB A:SER3708 3.5 19.4 1.0 CD A:GLU3876 3.7 22.4 1.0 CB A:THR3878 3.7 23.9 1.0 CG1 A:VAL3868 3.8 12.5 1.0 CG2 A:VAL3868 4.1 13.0 1.0 CG A:GLU3876 4.1 21.5 1.0 O A:HOH4144 4.2 40.9 1.0 NZ B:LYS3744 4.3 25.7 1.0 OG1 A:THR3878 4.3 31.1 1.0 CG2 A:THR3878 4.4 23.5 1.0 NZ A:LYS3866 4.5 44.7 1.0 OD2 B:ASP3751 4.5 71.8 1.0 CB A:VAL3868 4.6 12.7 1.0 CA A:THR3878 4.7 21.6 1.0 N A:THR3878 4.7 21.7 1.0 C A:MSE3877 4.8 21.8 1.0 OE1 A:GLU3876 4.8 24.0 1.0 O A:MSE3877 4.8 20.5 1.0 CA A:SER3708 4.9 19.2 1.0

S.Kumar, S.Mattoo. Crystal Structure of Yopt Domain of Pasteurella Multocida PFHB2-Toxin To Be Published.