Sodium in PDB 6uto: Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase

The structure of Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase, PDB code: 6uto was solved by A.Rodriguez-Hernandez, E.Romo-Arevalo, A.Rodriguez-Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.60 / 1.64
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	77.273, 186.709, 122.132, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 18.9

The binding sites of Sodium atom in the Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase (pdb code 6uto). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase, PDB code: 6uto:

Sodium binding site 1 out of 1 in the Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Native E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:50.3 occ:1.00 O A:HOH647 2.4 38.0 1.0 O A:HOH507 2.5 27.1 1.0 O A:HOH787 2.6 50.9 1.0 OG A:SER189 3.4 18.4 1.0 O A:HOH729 3.6 34.6 1.0 O A:HOH591 3.7 36.0 1.0 O A:HOH596 3.8 32.8 1.0 CB A:LYS191 4.1 25.0 1.0 N A:ASP192 4.2 22.7 1.0 N A:LYS191 4.3 22.4 1.0 CB A:ASP192 4.3 22.5 1.0 CA A:SER189 4.3 16.5 1.0 CB A:SER189 4.4 16.8 1.0 C A:SER189 4.4 18.3 1.0 C A:LYS191 4.5 24.5 1.0 CA A:LYS191 4.5 24.8 1.0 O A:SER189 4.7 17.2 1.0 N A:HIS190 4.8 21.6 1.0 CA A:ASP192 4.9 19.7 1.0 O A:HOH520 5.0 30.0 1.0

A.Rodriguez-Hernandez, E.Romo-Arevalo, A.Rodriguez-Romero. A Novel Substrate-Binding Site in the X-Ray Structure of An Oxidized E. Coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated By Single-Wavelength Anomalous Dispersion Crystals V. 9 622 2019.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST9120622