Sodium in PDB 6v04: DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus

The structure of DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus, PDB code: 6v04 was solved by S.K.Alvarado, M.D.Miller, M.Bhardwaj, J.S.Thorson, S.G.Van Lanen, G.N.Philips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.61 / 1.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	73.171, 73.171, 123.944, 90.00, 90.00, 120.00
R / Rfree (%)	16.2 / 18.8

The structure of DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus (pdb code 6v04). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus, PDB code: 6v04:

Sodium binding site 1 out of 1 in the DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:26.2 occ:0.50 OD1 A:ASP146 2.4 23.8 1.0 O A:HOH527 2.4 27.1 1.0 O A:HOH429 2.5 27.2 1.0 CG A:ASP146 3.2 25.0 1.0 OD2 A:ASP146 3.3 25.1 1.0 O A:HOH656 3.7 41.5 1.0 H A:ASP146 3.9 27.9 1.0 H A:TRP147 4.0 24.4 1.0 O A:HOH638 4.2 38.6 1.0 O A:HOH522 4.4 28.5 1.0 O A:TRP147 4.4 22.4 1.0 HE1 A:TRP147 4.5 25.9 1.0 NE1 A:TRP147 4.5 21.6 1.0 HD1 A:TRP147 4.6 27.1 1.0 CD1 A:TRP147 4.6 22.5 1.0 CB A:ASP146 4.6 23.1 1.0 N A:ASP146 4.7 23.2 1.0 N A:TRP147 4.8 20.4 1.0 HB2 A:TYR145 4.9 31.4 1.0 OD1 A:ASP252 5.0 24.0 1.0 HB3 A:ASP146 5.0 27.7 1.0

S.K.Alvarado, M.D.Miller, M.Bhardwaj, J.S.Thorson, S.G.Van Lanen, G.N.Philips Jr.. DYNU16 Crystal Structure, A Putative Protein in the Dynemicin Biosynthetic Locus To Be Published.