Sodium in PDB, part 136 (files: 5401-5440),
PDB 5ack-5b07
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5401-5440 (PDB 5ack-5b07).
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5ack (Na: 4) - Human PDK1 Kinase Domain in Complex with Allosteric Compound 7 Bound to the Pif-Pocket
Other atoms:
Cl (4);
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5aeq (Na: 2) - Neuronal Calcium Sensor (Ncs-1)From Rattus Norvegicus
Other atoms:
Ca (6);
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5af9 (Na: 2) - Thrombin in Complex with 4-Methoxy-N-(2-Pyridinyl)Benzamide
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5afb (Na: 1) - Crystal Structure of the LATROPHILIN3 Lectin and Olfactomedin Domains
Other atoms:
Ca (1);
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5afp (Na: 2) - Neuronal Calcium Sensor-1 (Ncs-1)From Rattus Norvegicus Complex with Rhodopsin Kinase Peptide From Homo Sapiens
Other atoms:
Ca (6);
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5afy (Na: 2) - Thrombin in Complex with 3-Chloro-Benzamide
Other atoms:
Cl (1);
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5afz (Na: 2) - Thrombin in Complex with (2R)-2-(Benzylsulfonylamino)-N-(2-( (4-Carbamimidoylphenyl)Methylamino)-2-Oxo-Propyl)-3-Phenyl- Propanamide
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5agv (Na: 12) - The Sliding Clamp of Mycobacterium Tuberculosis in Complex with A Natural Product.
Other atoms:
Ca (6);
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5ah2 (Na: 2) - The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product.
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5ah4 (Na: 1) - The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product.
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5ahe (Na: 1) - Crystal Structure of Salmonella Enterica Hisa
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5ahg (Na: 2) - Thrombin in Complex with ((4-Chlorophenyl)Sulfamoyl))Diemethylamine
Other atoms:
Cl (1);
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5ahl (Na: 1) - Apo-Form of the Deltacbs Mutant of Impdh From Pseudomonas Aeruginosa
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5ak7 (Na: 1) - Structure of Wt Porphyromonas Gingivalis Peptidylarginine Deiminase
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5ak8 (Na: 1) - Structure of C351A Mutant of Porphyromonas Gingivalis Peptidylarginine Deiminase
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5al6 (Na: 1) - Central Coiled-Coil Domain (Cccd) of Drosophila Melanogaster ANA2. A Natural, Parallel, Tetrameric Coiled-Coil Bundle.
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5am9 (Na: 2) - Crystal Structure of the Angiotensin-1 Converting Enzyme N- Domain in Complex with Amyloid-Beta 10-16
Other atoms:
Zn (4);
Ca (2);
Cl (4);
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5ame (Na: 1) - Crystal Structure of the Bromodomain of Human Surface Epitope Engineered BRD1A in Complex with 3D Consortium Fragment 4-Acetyl-Piperazin-2-One (Sgc - Diamond I04-1 Fragment Screening)
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5amf (Na: 1) - Crystal Structure of the Bromodomain of Human Surface Epitope Engineered BRD1A in Complex with 3D Consortium Fragment Ethyl 4,5,6,7-Tetrahydro-1H-Indazole-5- Carboxylate (Sgc - Diamond I04-1 Fragment Screening)
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5ao5 (Na: 4) - ENDO180 D1-4, Monoclinic Form
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5aog (Na: 1) - Structure of Sorghum Peroxidase
Other atoms:
Fe (1);
Ca (1);
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5apc (Na: 1) - Hen Egg White Lysozyme Illuminated with 0.4THZ Radiation
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5apd (Na: 1) - Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation
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5ape (Na: 1) - Hen Egg White Lysozyme Reference Dataset Odd Frames
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5apf (Na: 1) - Hen Egg White Lysozyme Reference Dataset Even Frames
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5apj (Na: 1) - Ligand Complex of Rorg Lbd
Other atoms:
F (4);
Cl (1);
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5axa (Na: 2) - Crystal Structure of Mouse Sahh Complexed with Adenosine
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5axb (Na: 2) - Crystal Structure of Mouse Sahh Complexed with Noraristeromycin
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5axc (Na: 2) - Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin
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5axo (Na: 10) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to Hydrolyzed Meropenem
Other atoms:
Zn (2);
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5axr (Na: 6) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to 2- Mercaptoethanesulfonate
Other atoms:
Zn (2);
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5axw (Na: 4) - Crystal Structure of Staphylococcus Aureus CAS9 in Complex with Sgrna and Target Dna (Ttgggt Pam)
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5ay4 (Na: 1) - Crystal Structure of Rna Duplex Containing C-C Base Pairs Obtained in the Presence of Hg(II)
Other atoms:
Br (2);
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5aya (Na: 2) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to L-Captopril
Other atoms:
Zn (2);
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5ayb (Na: 1) - Crystal Structure of GH1 Beta-Glucosidase TD2F2 N223G Mutant
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5ayi (Na: 1) - Crystal Structure of GH1 Beta-Glucosidase TD2F2 N223Q Mutant
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5azp (Na: 3) - Crystal Structure of A Membrane Protein From Pseudomonas Aeruginosa
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5b05 (Na: 8) - Lysozyme (Control Experiment)
Other atoms:
Cl (4);
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5b06 (Na: 8) - Lysozyme (Denatured By Naod and Refolded)
Other atoms:
Cl (4);
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5b07 (Na: 8) - Lysozyme (Denatured By Dcl and Refolded)
Other atoms:
Cl (4);
Page generated: Wed Nov 13 13:02:22 2024
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