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Sodium in PDB, part 136 (files: 5401-5440), PDB 5abd-5azp

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5401-5440 (PDB 5abd-5azp).
  1. 5abd (Na: 2) - Crystal Structure of Vegfr-1 Domain 2 in Presence of Cu
    Other atoms: Cu (5);
  2. 5abj (Na: 1) - Structure of Coxsackievirus A16 in Complex with GPP3
    Other atoms: Cl (1);
  3. 5ac7 (Na: 1) - S. Enterica Hisa with Mutations D7N, D10G, DUP13-15
  4. 5ack (Na: 4) - Human PDK1 Kinase Domain in Complex with Allosteric Compound 7 Bound to the Pif-Pocket
    Other atoms: Cl (4);
  5. 5aeq (Na: 2) - Neuronal Calcium Sensor (Ncs-1)From Rattus Norvegicus
    Other atoms: Ca (6);
  6. 5af9 (Na: 2) - Thrombin in Complex with 4-Methoxy-N-(2-Pyridinyl)Benzamide
  7. 5afb (Na: 1) - Crystal Structure of the LATROPHILIN3 Lectin and Olfactomedin Domains
    Other atoms: Ca (1);
  8. 5afp (Na: 2) - Neuronal Calcium Sensor-1 (Ncs-1)From Rattus Norvegicus Complex with Rhodopsin Kinase Peptide From Homo Sapiens
    Other atoms: Ca (6);
  9. 5afy (Na: 2) - Thrombin in Complex with 3-Chloro-Benzamide
    Other atoms: Cl (1);
  10. 5afz (Na: 2) - Thrombin in Complex with (2R)-2-(Benzylsulfonylamino)-N-(2-( (4-Carbamimidoylphenyl)Methylamino)-2-Oxo-Propyl)-3-Phenyl- Propanamide
  11. 5agv (Na: 12) - The Sliding Clamp of Mycobacterium Tuberculosis in Complex with A Natural Product.
    Other atoms: Ca (6);
  12. 5ah2 (Na: 2) - The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product.
  13. 5ah4 (Na: 1) - The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product.
  14. 5ahe (Na: 1) - Crystal Structure of Salmonella Enterica Hisa
  15. 5ahg (Na: 2) - Thrombin in Complex with ((4-Chlorophenyl)Sulfamoyl))Diemethylamine
    Other atoms: Cl (1);
  16. 5ahl (Na: 1) - Apo-Form of the Deltacbs Mutant of Impdh From Pseudomonas Aeruginosa
  17. 5ak7 (Na: 1) - Structure of Wt Porphyromonas Gingivalis Peptidylarginine Deiminase
  18. 5ak8 (Na: 1) - Structure of C351A Mutant of Porphyromonas Gingivalis Peptidylarginine Deiminase
  19. 5al6 (Na: 1) - Central Coiled-Coil Domain (Cccd) of Drosophila Melanogaster ANA2. A Natural, Parallel, Tetrameric Coiled-Coil Bundle.
  20. 5am9 (Na: 2) - Crystal Structure of the Angiotensin-1 Converting Enzyme N- Domain in Complex with Amyloid-Beta 10-16
    Other atoms: Zn (4); Ca (2); Cl (4);
  21. 5ame (Na: 1) - Crystal Structure of the Bromodomain of Human Surface Epitope Engineered BRD1A in Complex with 3D Consortium Fragment 4-Acetyl-Piperazin-2-One (Sgc - Diamond I04-1 Fragment Screening)
  22. 5amf (Na: 1) - Crystal Structure of the Bromodomain of Human Surface Epitope Engineered BRD1A in Complex with 3D Consortium Fragment Ethyl 4,5,6,7-Tetrahydro-1H-Indazole-5- Carboxylate (Sgc - Diamond I04-1 Fragment Screening)
  23. 5ao5 (Na: 4) - ENDO180 D1-4, Monoclinic Form
  24. 5aog (Na: 1) - Structure of Sorghum Peroxidase
    Other atoms: Fe (1); Ca (1);
  25. 5apc (Na: 1) - Hen Egg White Lysozyme Illuminated with 0.4THZ Radiation
  26. 5apd (Na: 1) - Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation
  27. 5ape (Na: 1) - Hen Egg White Lysozyme Reference Dataset Odd Frames
  28. 5apf (Na: 1) - Hen Egg White Lysozyme Reference Dataset Even Frames
  29. 5apj (Na: 1) - Ligand Complex of Rorg Lbd
    Other atoms: F (4); Cl (1);
  30. 5axa (Na: 2) - Crystal Structure of Mouse Sahh Complexed with Adenosine
  31. 5axb (Na: 2) - Crystal Structure of Mouse Sahh Complexed with Noraristeromycin
  32. 5axc (Na: 2) - Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin
  33. 5axo (Na: 10) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to Hydrolyzed Meropenem
    Other atoms: Zn (2);
  34. 5axr (Na: 6) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to 2- Mercaptoethanesulfonate
    Other atoms: Zn (2);
  35. 5axw (Na: 4) - Crystal Structure of Staphylococcus Aureus CAS9 in Complex with Sgrna and Target Dna (Ttgggt Pam)
  36. 5ay4 (Na: 1) - Crystal Structure of Rna Duplex Containing C-C Base Pairs Obtained in the Presence of Hg(II)
    Other atoms: Br (2);
  37. 5aya (Na: 2) - Crystal Structure of Metallo-Beta-Lactamase Smb-1 Bound to L-Captopril
    Other atoms: Zn (2);
  38. 5ayb (Na: 1) - Crystal Structure of GH1 Beta-Glucosidase TD2F2 N223G Mutant
  39. 5ayi (Na: 1) - Crystal Structure of GH1 Beta-Glucosidase TD2F2 N223Q Mutant
  40. 5azp (Na: 3) - Crystal Structure of A Membrane Protein From Pseudomonas Aeruginosa
Page generated: Tue Dec 1 10:42:13 2020

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