Sodium in PDB 5ah4: The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product.

All present enzymatic activity of The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product.:
2.7.7.7;

The structure of The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product., PDB code: 5ah4 was solved by P.Lukat, A.Kling, D.W.Heinz, R.Mueller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	76.27 / 2.31
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	151.888, 96.124, 92.272, 90.00, 124.41, 90.00
R / Rfree (%)	17.3 / 22.3

The binding sites of Sodium atom in the The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product. (pdb code 5ah4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product., PDB code: 5ah4:

Sodium binding site 1 out of 1 in the The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Sliding Clamp of Mycobacterium Smegmatis in Complex with A Natural Product. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1398 b:90.5 occ:1.00 O A:GLU327 2.5 43.1 1.0 O A:HOH2058 2.7 61.2 1.0 O A:PRO328 3.2 54.5 1.0 O A:HOH2029 3.2 44.9 0.9 C A:GLU327 3.2 48.8 1.0 O A:HOH2031 3.5 39.7 0.8 CB A:LEU329 3.6 48.7 1.0 CB A:GLU327 3.6 63.5 1.0 CA A:GLU327 3.7 54.4 1.0 C A:PRO328 3.8 52.0 1.0 N A:GLU327 3.8 51.1 1.0 O A:HOH2078 4.2 48.3 1.0 N A:PRO328 4.2 47.0 1.0 CA A:LEU329 4.2 46.2 1.0 N A:LEU329 4.2 45.1 1.0 CB A:ALA269 4.2 34.6 1.0 CD1 A:LEU329 4.4 54.7 1.0 CG A:LEU329 4.5 49.3 1.0 CA A:PRO328 4.6 46.6 1.0 C A:GLY326 4.8 48.6 1.0 O A:HOH2057 4.9 58.9 1.0 CG A:GLU327 5.0 73.2 1.0 O A:THR268 5.0 44.1 1.0 CD2 A:LEU329 5.0 42.1 1.0 O A:THR355 5.0 54.0 1.0

A.Kling, P.Lukat, D.V.Almeida, A.Bauer, E.Fontaine, S.Sordello, N.Zaburannyi, J.Herrmann, S.C.Wenzel, C.Konig, N.C.Ammerman, M.B.Barrio, K.Borchers, F.Bordon-Pallier, M.Bronstrup, G.Courtemanche, M.Gerlitz, M.Geslin, P.Hammann, D.W.Heinz, H.Hoffmann, S.Klieber, M.Kohlmann, M.Kurz, C.Lair, H.Matter, E.Nuermberger, S.Tyagi, L.Fraisse, J.H.Grosset, S.Lagrange, R.Muller. Antibiotics. Targeting Dnan For Tuberculosis Therapy Using Novel Griselimycins. Science V. 348 1106 2015.
ISSN: ISSN 0036-8075
PubMed: 26045430
DOI: 10.1126/SCIENCE.AAA4690