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Sodium in PDB 5ahe: Crystal Structure of Salmonella Enterica Hisa

Enzymatic activity of Crystal Structure of Salmonella Enterica Hisa

All present enzymatic activity of Crystal Structure of Salmonella Enterica Hisa:
5.3.1.16;

Protein crystallography data

The structure of Crystal Structure of Salmonella Enterica Hisa, PDB code: 5ahe was solved by A.Soderholm, X.Guo, M.S.Newton, G.B.Evans, J.Nasvall, W.M.Patrick, M.Selmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.250 / 1.70
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 86.769, 86.769, 121.530, 90.00, 90.00, 120.00
R / Rfree (%) 17.42 / 20.62

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Salmonella Enterica Hisa (pdb code 5ahe). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Salmonella Enterica Hisa, PDB code: 5ahe:

Sodium binding site 1 out of 1 in 5ahe

Go back to Sodium Binding Sites List in 5ahe
Sodium binding site 1 out of 1 in the Crystal Structure of Salmonella Enterica Hisa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Salmonella Enterica Hisa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1248

b:38.4
occ:1.00
O A:HOH2007 2.6 42.2 1.0
O A:HOH2006 2.7 25.2 1.0
O A:ALA5 2.9 15.5 1.0
CA A:GLY225 3.3 15.5 1.0
C A:GLY225 3.4 19.3 1.0
CD1 A:LEU229 3.7 29.1 1.0
C A:ALA5 3.8 13.6 1.0
O A:HOH2003 3.8 21.1 1.0
N A:ARG226 3.8 16.1 1.0
O A:GLY225 3.8 16.9 1.0
CA A:LEU6 3.9 15.3 1.0
N A:ASP7 4.1 16.5 1.0
N A:LEU6 4.2 13.8 1.0
CG A:LEU229 4.3 17.1 1.0
O1 A:PO41246 4.3 18.4 0.5
C A:LEU6 4.4 16.5 1.0
CA A:ARG226 4.5 20.5 1.0
O A:VAL14 4.6 26.9 1.0
CD2 A:LEU6 4.6 16.7 1.0
OD1 A:ASP7 4.6 32.6 1.0
N A:GLY225 4.7 15.0 1.0
CB A:ALA5 4.8 14.3 1.0
CA A:ALA5 4.9 11.2 1.0

Reference:

A.Soderholm, X.Guo, M.S.Newton, G.B.Evans, J.Nasvall, W.M.Patrick, M.Selmer. Two-Step Ligand Binding in A Beta/ALPHA8 Barrel Enzyme - Substrate-Bound Structures Shed New Light on the Catalytic Cycle of Hisa J.Biol.Chem. V. 290 24657 2015.
ISSN: ISSN 0021-9258
PubMed: 26294764
DOI: 10.1074/JBC.M115.678086
Page generated: Tue Dec 15 10:23:16 2020

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