Sodium in PDB 5ape: Hen Egg White Lysozyme Reference Dataset Odd Frames

All present enzymatic activity of Hen Egg White Lysozyme Reference Dataset Odd Frames:
3.2.1.17;

The structure of Hen Egg White Lysozyme Reference Dataset Odd Frames, PDB code: 5ape was solved by I.Lundholm, H.Rodilla, W.Y.Wahlgren, A.Duelli, G.Bourenkov, J.Vukusic, R.Friedman, J.Stake, T.Schneider, G.Katona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.09 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.240, 79.240, 37.500, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 19.2

The binding sites of Sodium atom in the Hen Egg White Lysozyme Reference Dataset Odd Frames (pdb code 5ape). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg White Lysozyme Reference Dataset Odd Frames, PDB code: 5ape:

Sodium binding site 1 out of 1 in the Hen Egg White Lysozyme Reference Dataset Odd Frames


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg White Lysozyme Reference Dataset Odd Frames within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1130 b:29.3 occ:1.00 O A:SER60 2.3 24.8 1.0 O A:HOH2017 2.4 35.5 1.0 O A:CYS64 2.4 22.7 1.0 O A:ARG73 2.5 35.1 1.0 O A:HOH2016 2.5 27.8 1.0 OG A:SER72 2.5 36.0 1.0 CB A:SER72 3.3 35.2 1.0 C A:CYS64 3.4 22.4 1.0 C A:SER60 3.5 22.3 1.0 C A:ARG73 3.5 34.7 1.0 CA A:ASN65 3.8 25.1 1.0 N A:ARG73 4.0 32.5 1.0 N A:ASN65 4.0 22.7 1.0 C A:SER72 4.1 37.9 1.0 CA A:SER60 4.1 21.1 1.0 CA A:SER72 4.3 36.2 1.0 N A:ASN74 4.3 29.9 1.0 CA A:ARG73 4.3 33.6 1.0 CB A:SER60 4.4 23.7 1.0 N A:CYS64 4.4 21.9 1.0 O A:ARG61 4.5 30.8 1.0 CA A:ASN74 4.5 27.4 1.0 C A:ARG61 4.5 28.4 1.0 CA A:CYS64 4.6 22.1 1.0 N A:ARG61 4.6 23.5 1.0 OD1 A:ASN65 4.6 36.2 1.0 O A:SER72 4.6 36.6 1.0 O A:HOH2018 4.6 28.6 1.0 N A:ASP66 4.7 21.7 1.0 CB A:ASN65 4.7 26.4 1.0 CB A:THR69 4.7 24.4 1.0 CB A:ASN74 4.8 29.6 1.0 CA A:ARG61 4.8 28.6 1.0 C A:ASN65 4.8 21.5 1.0 N A:TRP62 4.9 26.2 1.0 O A:THR69 5.0 29.3 1.0

I.Lundholm, H.Rodilla, W.Y.Wahlgren, A.Duelli, G.Bourenkov, J.Vukusic, R.Friedman, J.Stake, T.Schneider, G.Katona. Terahertz Radiation Induces Non-Thermal Structural Changes Associated with Frohlich Condensation in A Protein Crystal Struct.Dyn. V. 2 54702 2015.
ISSN: ESSN 2329-7778
PubMed: 26798828
DOI: 10.1063/1.4931825