Sodium in PDB 5apd: Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation

All present enzymatic activity of Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation:
3.2.1.17;

The structure of Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation, PDB code: 5apd was solved by I.Lundholm, H.Rodilla, W.Y.Wahlgren, A.Duelli, G.Bourenkov, J.Vukusic, R.Friedman, J.Stake, T.Schneider, G.Katona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.350, 79.350, 37.420, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 19.6

The binding sites of Sodium atom in the Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation (pdb code 5apd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation, PDB code: 5apd:

Sodium binding site 1 out of 1 in the Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg White Lysozyme Not Illuminated with 0.4THZ Radiation within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1130 b:30.3 occ:1.00 O A:SER60 2.3 26.2 1.0 O A:CYS64 2.4 25.2 1.0 O A:HOH2017 2.4 36.6 1.0 O A:ARG73 2.5 36.1 1.0 O A:HOH2016 2.5 28.4 1.0 OG A:SER72 2.6 34.9 1.0 CB A:SER72 3.3 34.1 1.0 C A:CYS64 3.4 23.1 1.0 C A:SER60 3.5 24.0 1.0 C A:ARG73 3.5 35.9 1.0 CA A:ASN65 3.8 26.2 1.0 N A:ARG73 4.0 33.7 1.0 N A:ASN65 4.0 24.0 1.0 C A:SER72 4.1 36.7 1.0 CA A:SER60 4.1 22.5 1.0 CA A:SER72 4.3 34.7 1.0 CA A:ARG73 4.3 34.0 1.0 CB A:SER60 4.3 24.6 1.0 N A:ASN74 4.4 30.7 1.0 N A:CYS64 4.4 22.8 1.0 O A:ARG61 4.5 32.0 1.0 C A:ARG61 4.5 30.1 1.0 CA A:ASN74 4.5 29.4 1.0 CA A:CYS64 4.6 22.6 1.0 N A:ARG61 4.6 24.5 1.0 OD1 A:ASN65 4.6 37.3 1.0 O A:HOH2018 4.6 28.5 1.0 O A:SER72 4.6 36.2 1.0 N A:ASP66 4.7 23.1 1.0 CB A:THR69 4.7 26.1 1.0 CB A:ASN65 4.7 28.6 1.0 CB A:ASN74 4.8 31.8 1.0 CA A:ARG61 4.8 30.2 1.0 C A:ASN65 4.8 23.2 1.0 N A:TRP62 4.9 28.0 1.0 O A:THR69 5.0 31.5 1.0

I.Lundholm, H.Rodilla, W.Y.Wahlgren, A.Duelli, G.Bourenkov, J.Vukusic, R.Friedman, J.Stake, T.Schneider, G.Katona. Terahertz Radiation Induces Non-Thermal Structural Changes Associated with Frohlich Condensation in A Protein Crystal Struct.Dyn. V. 2 54702 2015.
ISSN: ESSN 2329-7778
PubMed: 26798828
DOI: 10.1063/1.4931825