Sodium in PDB 5axc: Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin

All present enzymatic activity of Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin:
3.3.1.1;

The structure of Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin, PDB code: 5axc was solved by Y.Kusakabe, M.Ishihara, N.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.55
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	98.202, 102.881, 174.827, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21

The binding sites of Sodium atom in the Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin (pdb code 5axc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin, PDB code: 5axc:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:27.4 occ:1.00 OE2 A:GLU59 2.2 21.1 1.0 O A:HOH737 2.3 19.5 1.0 O C:HOH684 2.3 19.6 1.0 O A:HOH676 2.4 22.8 1.0 O A:HOH993 2.5 26.9 1.0 CD A:GLU59 3.1 20.0 1.0 OE1 A:GLU59 3.4 17.4 1.0 CB C:ASP208 3.7 15.7 1.0 O A:HOH719 4.2 19.7 1.0 N A:SER355 4.3 15.7 1.0 O A:HIS353 4.3 14.3 1.0 O C:HOH921 4.3 27.8 1.0 O C:HOH620 4.3 37.0 1.0 CG C:ASP208 4.4 18.9 1.0 O C:ASP208 4.4 16.0 1.0 CG A:GLU59 4.5 16.6 1.0 CB A:VAL58 4.5 14.1 1.0 CA A:PRO354 4.5 15.2 1.0 O A:MET351 4.6 16.4 1.0 O A:HOH848 4.6 19.4 1.0 OD2 C:ASP208 4.7 22.8 1.0 C A:PRO354 4.8 14.9 1.0 CB A:SER355 4.8 16.1 1.0 CB A:MET351 4.8 16.1 1.0 CG1 A:VAL58 4.9 15.8 1.0 CA A:SER355 5.0 15.3 1.0 CA C:ASP208 5.0 16.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin within 5.0Å range: probe atom residue distance (Å) B Occ C:Na502 b:24.9 occ:1.00 OE2 C:GLU59 2.2 21.0 1.0 O C:HOH826 2.2 21.7 1.0 O A:HOH640 2.4 20.5 1.0 O C:HOH756 2.4 21.4 1.0 O A:HOH1014 2.5 25.0 1.0 CD C:GLU59 3.2 16.3 1.0 OE1 C:GLU59 3.4 15.9 1.0 CB A:ASP208 3.7 17.1 1.0 O C:HOH602 4.1 0.2 1.0 O C:HOH783 4.2 18.9 1.0 CG A:ASP208 4.3 18.7 1.0 O A:ASP208 4.4 16.9 1.0 CB C:VAL58 4.4 16.1 1.0 O C:HIS353 4.4 15.1 1.0 O A:HOH604 4.4 32.8 1.0 N C:SER355 4.5 16.9 1.0 CG C:GLU59 4.5 15.8 1.0 O C:MET351 4.5 16.0 1.0 OD2 A:ASP208 4.6 24.4 1.0 O A:HOH932 4.6 25.9 1.0 CG1 C:VAL58 4.7 14.9 1.0 O C:HOH764 4.7 16.8 1.0 CA C:PRO354 4.7 17.5 1.0 CB C:MET351 4.8 15.1 1.0 CB C:SER355 4.9 16.5 1.0 OD1 A:ASP208 4.9 23.2 1.0 C C:PRO354 4.9 17.7 1.0 CG2 C:VAL58 5.0 16.2 1.0 CA A:ASP208 5.0 16.4 1.0 OE1 C:GLN85 5.0 16.6 1.0

Y.Kusakabe, M.Ishihara, N.Tanaka. Crystal Structure of Mouse Sahh Complexed with 3'-Keto Aristeromycin To Be Published.