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Sodium in PDB, part 296 (files: 11801-11840), PDB 9fih-9k9z

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11801-11840 (PDB 9fih-9k9z).
  1. 9fih (Na: 10) - Crystal Structure of Nuoef Variant P228R(Nuof) From Aquifex Aeolicus Bound to Nadh Under Anoxic Conditions After 10 Min Soaking
    Other atoms: Fe (12);
  2. 9fii (Na: 9) - Crystal Structure of Oxidized Nuoef Variant E222K(Nuof) From Aquifex Aeolicus
    Other atoms: Cl (5); Fe (12);
  3. 9fij (Na: 15) - Crystal Structure of Reduced Nuoef Variant E222K(Nuof) From Aquifex Aeolicus
    Other atoms: Fe (12); Cl (7);
  4. 9fil (Na: 10) - Crystal Structure of Reduced Nuoef Variant E222K(Nuof) From Aquifex Aeolicus Bound to Nad+
    Other atoms: Fe (12); Cl (3);
  5. 9fw2 (Na: 1) - Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14
    Other atoms: Zn (4);
  6. 9fym (Na: 2) - Lacto-N-Biosidase From Treponema Denticola Atcc 35405
    Other atoms: Zn (2);
  7. 9g34 (Na: 2) - The Hiv Protease Inhibitor Darunavir Binding to the Active Site of Cryphonectria Parasitica Endothiapepsin
  8. 9gcv (Na: 1) - Identification of Chloride Ions in Lysozyme at Long Wavelengths
    Other atoms: Cl (5);
  9. 9ggi (Na: 1) - Crystal Structure of Argininosuccinate Lyase From Arabidopsis Thaliana (Atasl)
    Other atoms: Cl (6);
  10. 9ghx (Na: 1) - Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.
    Other atoms: Re (5); Cl (4);
  11. 9gky (Na: 2) - Crystal Structure of Histone Deacetylase (Hdah) From Vibrio Cholerae in Complex with Decanoic Acid
    Other atoms: Zn (2); K (9);
  12. 9grq (Na: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Sam and Theophylline
    Other atoms: Zn (2);
  13. 9icb (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and COCL2
    Other atoms: Co (2);
  14. 9icc (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and CRCL3
    Other atoms: Cr (1);
  15. 9ice (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and CUCL2 (0.1 Millimolar)
  16. 9icf (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
    Other atoms: Zn (2);
  17. 9icg (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Zn (3);
  18. 9ich (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Zn (3);
  19. 9ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Zn (2);
  20. 9icj (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna
  21. 9ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Artificial Mother Liquor
  22. 9icl (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Pyrophosphate and MNCL2
    Other atoms: Mn (2);
  23. 9icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Double Stranded Dna (No 5'-Phosphate)
  24. 9icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked in the Presence of Ddctp and MGCL2
    Other atoms: Mg (1);
  25. 9ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Dttp and MGCL2
  26. 9icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Pyrophosphate (1 Millimolar) and MGCL2 (5 Millimolar)
  27. 9icq (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  28. 9icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxycytidine-5'-Triphosphate, Soaked in the Presence of Dctp and MNCL2
    Other atoms: Mn (2);
  29. 9ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked in the Presence of Ddctp and MNCL2
    Other atoms: Mn (2);
  30. 9ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyguanosine-5'-Triphosphate, Soaked in the Presence of Dgtp and MNCL2
    Other atoms: Mn (2);
  31. 9icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (1);
  32. 9icv (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
    Other atoms: Zn (3);
  33. 9icw (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Native Structure
  34. 9icx (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna (Non Gapped Dna Only)
  35. 9icy (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna (Non Gapped Dna Only)
  36. 9jfb (Na: 1) - Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc
    Other atoms: Cl (4);
  37. 9jff (Na: 1) - Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc in Complex with Reaction Intermediate
    Other atoms: Cl (3);
  38. 9k72 (Na: 5) - Crystal Structure of Tsabgl Using Merged Datasets
  39. 9k73 (Na: 3) - Crystal Structure of Tsabgl
  40. 9k9z (Na: 1) - Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm)
    Other atoms: Cl (2);
Page generated: Wed Nov 13 13:11:42 2024

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